Factsheet for PGSC0003DMT400057110

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065280.2.1	Tomato	cytosol, nucleus, unclear	99.02	99.02
GSMUA_Achr5P24540_001	Banana	cytosol	89.22	90.1
KRH11550	Soybean	mitochondrion	86.27	87.13
KRH36573	Soybean	cytosol, extracellular, peroxisome	86.27	87.13
TraesCS2D01G159600.1	Wheat	golgi, unclear	84.31	84.31
EES13880	Sorghum	cytosol	84.31	84.31
TraesCS2B01G179400.1	Wheat	cytosol	84.31	84.31
TraesCS2A01G154100.1	Wheat	cytosol	84.31	84.31
VIT_19s0090g01760.t01	Wine grape	cytosol	82.35	84.0
GSMUA_Achr3P07340_001	Banana	cytosol	81.37	83.84
TraesCS6B01G101700.1	Wheat	cytosol	83.33	83.33
Zm00001d050384_P001	Maize	mitochondrion	83.33	82.52
CDY32249	Canola	cytosol, extracellular, peroxisome	82.35	79.25
CDY62425	Canola	cytosol, extracellular, peroxisome	82.35	79.25
Bra012716.1-P	Field mustard	cytosol, extracellular, peroxisome	82.35	78.5
CDY09691	Canola	cytosol, extracellular, peroxisome	82.35	78.5
CDX90521	Canola	cytosol, extracellular, peroxisome	82.35	78.5
AT4G16450.1	Thale cress	cytosol	81.37	78.3
Bra038466.1-P	Field mustard	cytosol, extracellular, peroxisome	83.33	66.41
Os08t0431500-01	Rice	mitochondrion	86.27	63.77
TraesCS6A01G076300.1	Wheat	cytosol, nucleus, peroxisome	85.29	60.84
HORVU2Hr1G027860.1	Barley	mitochondrion	81.37	47.7
HORVU6Hr1G013470.1	Barley	peroxisome	47.06	45.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400057110	EnsemblPlantsGene:PGSC0003DMG400022186	EntrezGene:102591325	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0016020	GO:GO:0016021	GO:GO:0031966
GO:GO:0045271	InterPro:NADH-UbQ_OxRdtase_su21_N	KEGG:00190+1.6.99.3+1.6.5.3	PANTHER:PTHR34062	PFAM:PF10785	PGSC:PGSC0003DMG400022186
RefSeq:XP_006346160.1	TMHMM:TMhelix	UniParc:UPI0002963BA6	UniProt:M1C0F2	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022186]

Coordinates

chr7:-:55331677..55332843

Molecular Weight (calculated)

11057.5 Da

IEP (calculated)

10.102

GRAVY (calculated)

-0.047

Length

102 amino acids

Sequence
(BLAST)

001: MNTDITASAK PEYPVVDRNP PFTKTVGNFN TLDYLRLTTI TGISVTVGYL SGIKPGIRGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NEREVAKAKY
101: KI

Best Arabidopsis Sequence Match ( AT4G16450.1 )
(BLAST)

001: MNTDITALEK AQYPVVDRNP AFTKVVGNFS TLDYLRFSTI TGISVTVGYL SGIKPGIKGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NDGEVASYQK
101: RGGFSK

Arabidopsis Description

At4g16450 [Source:UniProtKB/TrEMBL;Acc:Q84W12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.