Factsheet for Solyc07g065280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057110	Potato	cytosol	99.02	99.02
GSMUA_Achr5P24540_001	Banana	cytosol	90.2	91.09
KRH11550	Soybean	mitochondrion	86.27	87.13
KRH36573	Soybean	cytosol, extracellular, peroxisome	86.27	87.13
TraesCS2D01G159600.1	Wheat	golgi, unclear	84.31	84.31
EES13880	Sorghum	cytosol	84.31	84.31
TraesCS2B01G179400.1	Wheat	cytosol	84.31	84.31
TraesCS2A01G154100.1	Wheat	cytosol	84.31	84.31
VIT_19s0090g01760.t01	Wine grape	cytosol	82.35	84.0
GSMUA_Achr3P07340_001	Banana	cytosol	81.37	83.84
TraesCS6B01G101700.1	Wheat	cytosol	83.33	83.33
Zm00001d050384_P001	Maize	mitochondrion	83.33	82.52
CDY32249	Canola	cytosol, extracellular, peroxisome	83.33	80.19
CDY62425	Canola	cytosol, extracellular, peroxisome	83.33	80.19
Bra012716.1-P	Field mustard	cytosol, extracellular, peroxisome	83.33	79.44
CDY09691	Canola	cytosol, extracellular, peroxisome	83.33	79.44
CDX90521	Canola	cytosol, extracellular, peroxisome	83.33	79.44
AT4G16450.1	Thale cress	cytosol	82.35	79.25
Bra038466.1-P	Field mustard	cytosol, extracellular, peroxisome	84.31	67.19
Os08t0431500-01	Rice	mitochondrion	86.27	63.77
TraesCS6A01G076300.1	Wheat	cytosol, nucleus, peroxisome	85.29	60.84
HORVU2Hr1G027860.1	Barley	mitochondrion	81.37	47.7
HORVU6Hr1G013470.1	Barley	peroxisome	47.06	45.28

Protein Annotations

EnsemblPlants:Solyc07g065280.2.1	EnsemblPlantsGene:Solyc07g065280.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0016020	GO:GO:0016021	GO:GO:0031966	GO:GO:0045271
InterPro:NADH-UbQ_OxRdtase_su21_N	KEGG:00190+1.6.99.3+1.6.5.3	PANTHER:PTHR34062	PFAM:PF10785	TMHMM:TMhelix	UniParc:UPI000276CA4F
UniProt:K4CHK7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:67104245..67105426

Molecular Weight (calculated)

10958.4 Da

IEP (calculated)

9.910

GRAVY (calculated)

-0.007

Length

102 amino acids

Sequence
(BLAST)

001: MNTDITASAK PEYPVVDRNP PFTKTVGNFN TLDYLRLTTI TGISVTVGYL SGIKPGIRGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NEGEVAKAKY
101: KI

Best Arabidopsis Sequence Match ( AT4G16450.1 )
(BLAST)

001: MNTDITALEK AQYPVVDRNP AFTKVVGNFS TLDYLRFSTI TGISVTVGYL SGIKPGIKGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NDGEVASYQK
101: RGGFSK

Arabidopsis Description

At4g16450 [Source:UniProtKB/TrEMBL;Acc:Q84W12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.