Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P24540_001 | Banana | cytosol | 87.88 | 86.14 |
| KRH11550 | Soybean | mitochondrion | 85.86 | 84.16 |
| KRH36573 | Soybean | cytosol, extracellular, peroxisome | 85.86 | 84.16 |
| PGSC0003DMT400057110 | Potato | cytosol | 83.84 | 81.37 |
| Solyc07g065280.2.1 | Tomato | cytosol, nucleus, unclear | 83.84 | 81.37 |
| VIT_19s0090g01760.t01 | Wine grape | cytosol | 81.82 | 81.0 |
| CDY32249 | Canola | cytosol, extracellular, peroxisome | 77.78 | 72.64 |
| CDY62425 | Canola | cytosol, extracellular, peroxisome | 77.78 | 72.64 |
| AT4G16450.1 | Thale cress | cytosol | 76.77 | 71.7 |
| Bra012716.1-P | Field mustard | cytosol, extracellular, peroxisome | 76.77 | 71.03 |
| CDX90521 | Canola | cytosol, extracellular, peroxisome | 76.77 | 71.03 |
| CDY09691 | Canola | cytosol, extracellular, peroxisome | 76.77 | 71.03 |
| Bra038466.1-P | Field mustard | cytosol, extracellular, peroxisome | 78.79 | 60.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P07340_001 | EnsemblPlants:GSMUA_Achr3T07340_001 | EnsemblPlantsGene:GSMUA_Achr3G07340_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:NADH-UbQ_OxRdtase_su21_N | KEGG:00190+1.6.99.3+1.6.5.3 | PANTHER:PTHR34062 | PFAM:PF10785 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002949A7E | UniProt:M0SCK1 | MapMan:35.2 | : | : | : |
Description
Putative NADH-ubiquinone oxidoreductase 21 kDa subunit [Source:GMGC_GENE;Acc:GSMUA_Achr3G07340_001]
Coordinates
chr3:+:5036794..5037477
Molecular Weight (calculated)
10680.8 Da
IEP (calculated)
9.393
GRAVY (calculated)
-0.018
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MNTDTAAAVK PEYPVVDRNP PFTKTVANFN TLDYLRLLTI TGVSVTVGYL SGIKPNVRGP STVTGGLIGV LGGFMYAYQN SAGRLMGFFP NDDEVARYK
001: MNTDITALEK AQYPVVDRNP AFTKVVGNFS TLDYLRFSTI TGISVTVGYL SGIKPGIKGP SMVTGGLIGL MGGFMYAYQN SAGRLMGFFP NDGEVASYQK
101: RGGFSK
101: RGGFSK
Arabidopsis Description
At4g16450 [Source:UniProtKB/TrEMBL;Acc:Q84W12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.