Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 8
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
mitochondrion: 27780359 endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52179 | Soybean | mitochondrion | 97.65 | 97.65 |
| GSMUA_Achr1P11570_001 | Banana | cytosol, mitochondrion, plastid | 58.69 | 94.7 |
| TraesCS3D01G287400.1 | Wheat | mitochondrion | 75.12 | 79.21 |
| TraesCS3B01G322300.1 | Wheat | golgi | 75.12 | 79.21 |
| TraesCS3A01G287600.1 | Wheat | mitochondrion | 75.12 | 79.21 |
| CDY61439 | Canola | mitochondrion | 79.81 | 79.07 |
| CDX97144 | Canola | mitochondrion | 79.34 | 78.6 |
| Bra008938.1-P | Field mustard | mitochondrion | 79.34 | 78.24 |
| CDX69732 | Canola | mitochondrion | 79.34 | 78.24 |
| Bra006117.1-P | Field mustard | mitochondrion | 78.87 | 77.42 |
| CDX70421 | Canola | mitochondrion | 78.87 | 77.42 |
| CDX78444 | Canola | mitochondrion | 78.87 | 77.42 |
| Os01t0720300-00 | Rice | mitochondrion | 72.3 | 77.39 |
| Os05t0533700-01 | Rice | mitochondrion | 73.24 | 76.47 |
| AT5G11770.1 | Thale cress | mitochondrion | 77.93 | 76.15 |
| KRH15514 | Soybean | nucleus | 73.71 | 75.85 |
| EES18559 | Sorghum | mitochondrion | 71.83 | 75.74 |
| EES03536 | Sorghum | mitochondrion | 70.89 | 75.5 |
| TraesCS1B01G368900.1 | Wheat | mitochondrion | 71.83 | 75.37 |
| Solyc11g070030.1.1 | Tomato | plastid | 75.12 | 75.12 |
| Zm00001d011732_P001 | Maize | mitochondrion | 70.42 | 75.0 |
| TraesCS1A01G353000.1 | Wheat | mitochondrion | 68.54 | 74.87 |
| Bra023341.1-P | Field mustard | mitochondrion | 76.06 | 74.65 |
| TraesCS1D01G357100.1 | Wheat | mitochondrion | 71.36 | 74.15 |
| HORVU3Hr1G068360.4 | Barley | cytosol | 70.42 | 69.12 |
| KRH15515 | Soybean | mitochondrion | 47.42 | 61.96 |
| Zm00001d043620_P001 | Maize | mitochondrion | 36.62 | 59.09 |
| KRH41779 | Soybean | cytosol, mitochondrion, nucleus | 11.74 | 36.76 |
| GSMUA_Achr6P26560_001 | Banana | cytoskeleton, mitochondrion, plasma membrane | 28.17 | 33.9 |
Protein Annotations
| EntrezGene:100817153 | MapMan:2.4.1.2.3 | Gene3D:3.40.50.12280 | EMBL:ACUP02002171 | EnsemblPlantsGene:GLYMA_04G050600 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008137 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 |
| GO:GO:0046872 | GO:GO:0048038 | GO:GO:0051536 | GO:GO:0051539 | GO:GO:0055114 | UniProt:I1JTW0 |
| EnsemblPlants:KRH61494 | ProteinID:KRH61494 | ProteinID:KRH61494.1 | HAMAP:MF_01356 | InterPro:NADH_UQ_OxRdtase_20Kd_su | InterPro:NADH_UbQ_OxRdtase-like_20kDa |
| PFAM:PF01058 | ScanProsite:PS01150 | PANTHER:PTHR11995 | PANTHER:PTHR11995:SF19 | SUPFAM:SSF56770 | TIGRFAMs:TIGR01957 |
| UniParc:UPI000233A7D6 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:4111460..4114237
Molecular Weight (calculated)
23502.6 Da
IEP (calculated)
9.739
GRAVY (calculated)
-0.111
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLSRASSR FPQLVSPQRV VSLHTTLPSL NASTSTPTPA PYAPPPPPSA SPPAGVSKAA EFVISKVDDL MNWARRGSIW PMTFGLACCA VEMMHTGAAR
101: YDLDRFGIIF RPSPRQSDCM IVAGTLTNKM APALRKVYDQ MPEPRWVVSM GSCANGGGYY HYSYSVVRGC DRIVPVDIYI PGCPPTAEAL LYGLLQLQKK
201: INRRKDFLHW WTK
101: YDLDRFGIIF RPSPRQSDCM IVAGTLTNKM APALRKVYDQ MPEPRWVVSM GSCANGGGYY HYSYSVVRGC DRIVPVDIYI PGCPPTAEAL LYGLLQLQKK
201: INRRKDFLHW WTK
001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.