Factsheet for Solyc11g070030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 8
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	58.69	94.7
VIT_04s0008g00830.t01	Wine grape	mitochondrion	77.0	78.47
TraesCS3A01G287600.1	Wheat	mitochondrion	73.24	77.23
TraesCS3B01G322300.1	Wheat	golgi	73.24	77.23
TraesCS3D01G287400.1	Wheat	mitochondrion	73.24	77.23
KRH52179	Soybean	mitochondrion	76.53	76.53
TraesCS1A01G353000.1	Wheat	mitochondrion	69.95	76.41
EES18559	Sorghum	mitochondrion	71.36	75.25
TraesCS1D01G357100.1	Wheat	mitochondrion	72.3	75.12
KRH61494	Soybean	mitochondrion	75.12	75.12
CDX97144	Canola	mitochondrion	75.59	74.88
CDY61439	Canola	mitochondrion	75.59	74.88
TraesCS1B01G368900.1	Wheat	mitochondrion	70.89	74.38
KRH15514	Soybean	nucleus	71.36	73.43
Os01t0720300-00	Rice	mitochondrion	68.54	73.37
EES03536	Sorghum	mitochondrion	68.54	73.0
Bra023341.1-P	Field mustard	mitochondrion	74.18	72.81
CDX69732	Canola	mitochondrion	73.71	72.69
Zm00001d011732_P001	Maize	mitochondrion	68.08	72.5
CDX70421	Canola	mitochondrion	73.71	72.35
Bra008938.1-P	Field mustard	mitochondrion	73.24	72.22
Bra006117.1-P	Field mustard	mitochondrion	73.24	71.89
Os05t0533700-01	Rice	mitochondrion	68.54	71.57
CDX78444	Canola	mitochondrion	72.77	71.43
AT5G11770.1	Thale cress	mitochondrion	72.77	71.1
HORVU3Hr1G068360.4	Barley	cytosol	69.01	67.74
Zm00001d043620_P001	Maize	mitochondrion	37.56	60.61
KRH15515	Soybean	mitochondrion	45.54	59.51
Solyc02g063080.1.1	Tomato	cytosol, extracellular, mitochondrion	12.21	38.24
GSMUA_Achr6P26560_001	Banana	cytoskeleton, mitochondrion, plasma membrane	27.7	33.33
Solyc01g007300.1.1	Tomato	nucleus	28.64	27.11
Solyc06g036210.1.1	Tomato	mitochondrion	6.57	12.07

Protein Annotations

MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	UniProt:K4DAF9	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa
PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF19	SUPFAM:SSF56770	EnsemblPlantsGene:Solyc11g070030.1
EnsemblPlants:Solyc11g070030.1.1	TIGRFAMs:TIGR01957	UniParc:UPI000276954A	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:54591888..54597480

Molecular Weight (calculated)

23507.7 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.066

Length

213 amino acids

Sequence
(BLAST)

001: MAFIARNAKL LTGTAPFLQR AATIHTTLPS LSQQPASSPA TYGGAQPPSM NTPAGISKPA EYVISKVDDL MNWARRGSIW PMTFGLACCA VEMMHAGAAR
101: YDFDRFGIIF RPSPRQSDVM IVAGTLTNKM APALRKVYDQ MPEPRWVISM GSCANGGGYY HYSYAVVRGC DRIVPVDIYV PGCPPTAEAL LYGILQLQKK
201: INRRKDLLMW WTQ

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.