Factsheet for TraesCS3B01G322300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G287400.1	Wheat	mitochondrion	100.0	100.0
TraesCS3A01G287600.1	Wheat	mitochondrion	100.0	100.0
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	64.85	99.24
TraesCS1B01G368900.1	Wheat	mitochondrion	83.66	83.25
EES18559	Sorghum	mitochondrion	81.19	81.19
Os01t0720300-00	Rice	mitochondrion	78.22	79.4
Os05t0533700-01	Rice	mitochondrion	79.7	78.92
Zm00001d011732_P001	Maize	mitochondrion	77.72	78.5
EES03536	Sorghum	mitochondrion	77.72	78.5
KRH61494	Soybean	mitochondrion	79.21	75.12
KRH52179	Soybean	mitochondrion	79.21	75.12
VIT_04s0008g00830.t01	Wine grape	mitochondrion	77.23	74.64
CDX97144	Canola	mitochondrion	79.21	74.42
KRH15514	Soybean	nucleus	75.74	73.91
CDX69732	Canola	mitochondrion	78.71	73.61
CDY61439	Canola	mitochondrion	78.22	73.49
Zm00001d043620_P001	Maize	mitochondrion	48.02	73.48
Solyc11g070030.1.1	Tomato	plastid	77.23	73.24
Bra008938.1-P	Field mustard	mitochondrion	78.22	73.15
AT5G11770.1	Thale cress	mitochondrion	78.71	72.94
CDX78444	Canola	mitochondrion	78.22	72.81
Bra023341.1-P	Field mustard	mitochondrion	78.22	72.81
Bra006117.1-P	Field mustard	mitochondrion	78.22	72.81
HORVU3Hr1G068360.4	Barley	cytosol	77.72	72.35
CDX70421	Canola	mitochondrion	77.72	72.35
KRH15515	Soybean	mitochondrion	46.04	57.06
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	18.81	26.57

Protein Annotations

MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995
PANTHER:PTHR11995:SF19	SUPFAM:SSF56770	TIGRFAMs:TIGR01957	EnsemblPlantsGene:TraesCS3B01G322300	EnsemblPlants:TraesCS3B01G322300.1	SEG:seg

Description

No Description!

Coordinates

chr3B:+:521695871..521699149

Molecular Weight (calculated)

22060.9 Da

IEP (calculated)

9.696

GRAVY (calculated)

-0.023

Length

202 amino acids

Sequence
(BLAST)

001: MALLPRTARL ALLSASPRTY SAAAAAGASP TPPAPYAGVP PPAAGSKAAE FVVSKVDDLM NWARRGSIWP MTFGLACCAV EMMHAGAARY DFDRFGVIFR
101: PSPRQSDCMI VAGTLTNKMA PALRKVYDQM PEPRWVISMG SCANGGGYYH YSYSVVRGCD RIVPVDIYVP GCPPTAEALL YGVLQLQKKI NRRKDFLHWW
201: TK

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.