CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	59.42	93.18
TraesCS3B01G322300.1	Wheat	golgi	73.91	75.74
TraesCS3A01G287600.1	Wheat	mitochondrion	73.91	75.74
TraesCS3D01G287400.1	Wheat	mitochondrion	73.91	75.74
KRH52179	Soybean	mitochondrion	76.81	74.65
TraesCS1B01G368900.1	Wheat	mitochondrion	72.46	73.89
KRH61494	Soybean	mitochondrion	75.85	73.71
TraesCS1A01G353000.1	Wheat	mitochondrion	69.08	73.33
CDX97144	Canola	mitochondrion	75.85	73.02
CDY61439	Canola	mitochondrion	75.85	73.02
CDX70421	Canola	mitochondrion	76.33	72.81
CDX78444	Canola	mitochondrion	76.33	72.81
Bra008938.1-P	Field mustard	mitochondrion	75.85	72.69
CDX69732	Canola	mitochondrion	75.85	72.69
AT5G11770.1	Thale cress	mitochondrion	76.33	72.48
Bra006117.1-P	Field mustard	mitochondrion	75.85	72.35
EES18559	Sorghum	mitochondrion	70.53	72.28
TraesCS1D01G357100.1	Wheat	mitochondrion	71.5	72.2
Zm00001d011732_P001	Maize	mitochondrion	69.57	72.0
EES03536	Sorghum	mitochondrion	69.57	72.0
Bra023341.1-P	Field mustard	mitochondrion	75.36	71.89
Solyc11g070030.1.1	Tomato	plastid	73.43	71.36
Os01t0720300-00	Rice	mitochondrion	68.6	71.36
Os05t0533700-01	Rice	mitochondrion	69.08	70.1
HORVU3Hr1G068360.4	Barley	cytosol	69.08	65.9
KRH15515	Soybean	mitochondrion	49.28	62.58
Zm00001d043620_P001	Maize	mitochondrion	36.72	57.58
KRH41779	Soybean	cytosol, mitochondrion, nucleus	11.11	33.82
GSMUA_Achr6P26560_001	Banana	cytoskeleton, mitochondrion, plasma membrane	28.02	32.77

Protein Annotations

EntrezGene:100814025	MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	EMBL:ACUP02008608	EnsemblPlantsGene:GLYMA_14G093300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	UniProt:I1M904	EnsemblPlants:KRH15514	ProteinID:KRH15514	ProteinID:KRH15514.1
HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995
PANTHER:PTHR11995:SF19	SUPFAM:SSF56770	TIGRFAMs:TIGR01957	UniParc:UPI000233B9A6	:	:

Description

hypothetical protein

Coordinates

chr14:-:8671736..8674095

Molecular Weight (calculated)

22994.0 Da

IEP (calculated)

9.602

GRAVY (calculated)

-0.037

Length

207 amino acids

Sequence
(BLAST)

001: MALVTRIGLT WRLPQRLVSA SLHSNSTGTT APTSYCALPQ PTANSSPVGL SKPAEFVISK VDSLLNWART GSIWPMTFGL ACCAVEMMHT GGARYDLDRF
101: GIIFRPSPRQ SDCMIVAGTL TNKMAPALRK VYDQMPEPRW VISMGSCANG GGYYHYSYAV VRGCDRIVPV DIYVPGCPPT AEALLYGLLQ LQKKINRRKD
201: FLWWWTR

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.