CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61494	Soybean	mitochondrion	97.65	97.65
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	59.15	95.45
VIT_04s0008g00830.t01	Wine grape	mitochondrion	82.63	84.21
CDY61439	Canola	mitochondrion	80.28	79.53
TraesCS3D01G287400.1	Wheat	mitochondrion	75.12	79.21
TraesCS3B01G322300.1	Wheat	golgi	75.12	79.21
TraesCS3A01G287600.1	Wheat	mitochondrion	75.12	79.21
CDX97144	Canola	mitochondrion	79.81	79.07
Bra008938.1-P	Field mustard	mitochondrion	79.81	78.7
CDX69732	Canola	mitochondrion	79.81	78.7
Bra006117.1-P	Field mustard	mitochondrion	79.34	77.88
CDX78444	Canola	mitochondrion	79.34	77.88
CDX70421	Canola	mitochondrion	79.34	77.88
Os01t0720300-00	Rice	mitochondrion	71.83	76.88
KRH15514	Soybean	nucleus	74.65	76.81
AT5G11770.1	Thale cress	mitochondrion	78.4	76.61
Solyc11g070030.1.1	Tomato	plastid	76.53	76.53
EES03536	Sorghum	mitochondrion	71.83	76.5
Os05t0533700-01	Rice	mitochondrion	73.24	76.47
Zm00001d011732_P001	Maize	mitochondrion	71.36	76.0
TraesCS1B01G368900.1	Wheat	mitochondrion	72.3	75.86
EES18559	Sorghum	mitochondrion	71.83	75.74
Bra023341.1-P	Field mustard	mitochondrion	77.0	75.58
TraesCS1A01G353000.1	Wheat	mitochondrion	69.01	75.38
TraesCS1D01G357100.1	Wheat	mitochondrion	71.83	74.63
HORVU3Hr1G068360.4	Barley	cytosol	70.89	69.59
KRH15515	Soybean	mitochondrion	47.89	62.58
Zm00001d043620_P001	Maize	mitochondrion	36.15	58.33
KRH41779	Soybean	cytosol, mitochondrion, nucleus	11.74	36.76
GSMUA_Achr6P26560_001	Banana	cytoskeleton, mitochondrion, plasma membrane	28.17	33.9

Protein Annotations

EntrezGene:100802267	MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	EMBL:ACUP02003410	EnsemblPlantsGene:GLYMA_06G051400	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	UniProt:I1K8C1
EnsemblPlants:KRH52179	ProteinID:KRH52179	ProteinID:KRH52179.1	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa
PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF19	SUPFAM:SSF56770	TIGRFAMs:TIGR01957
UniParc:UPI000233A12F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3884996..3887519

Molecular Weight (calculated)

23478.5 Da

IEP (calculated)

9.739

GRAVY (calculated)

-0.108

Length

213 amino acids

Sequence
(BLAST)

001: MALLSRASSR FPQLVSPQRV VSLHTTLPSL NASPSTATPT PYAPPPPPSA SSPAGVSKAA EFVISKVDDL MNWARRGSIW PMTFGLACCA VEMMHTGAAR
101: YDLDRFGIIF RPSPRQSDCM IVAGTLTNKM APALRKVYDQ MPEPRWVVSM GSCANGGGYY HYSYSVVRGC DRIVPVDIYV PGCPPTAEAL LYGLLQLQKK
201: INRRKDFLHW WTK

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.