Factsheet for Bra006117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70421	Canola	mitochondrion	97.7	97.7
Bra008938.1-P	Field mustard	mitochondrion	95.85	96.3
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	58.06	95.45
AT5G11770.1	Thale cress	mitochondrion	88.94	88.53
Bra023341.1-P	Field mustard	mitochondrion	88.02	88.02
KRH52179	Soybean	mitochondrion	77.88	79.34
KRH61494	Soybean	mitochondrion	77.42	78.87
VIT_04s0008g00830.t01	Wine grape	mitochondrion	75.58	78.47
TraesCS3D01G287400.1	Wheat	mitochondrion	72.81	78.22
TraesCS3B01G322300.1	Wheat	golgi	72.81	78.22
TraesCS3A01G287600.1	Wheat	mitochondrion	72.81	78.22
TraesCS1A01G353000.1	Wheat	mitochondrion	69.12	76.92
Os01t0720300-00	Rice	mitochondrion	70.51	76.88
TraesCS1B01G368900.1	Wheat	mitochondrion	71.89	76.85
Os05t0533700-01	Rice	mitochondrion	71.89	76.47
EES18559	Sorghum	mitochondrion	70.97	76.24
EES03536	Sorghum	mitochondrion	70.05	76.0
KRH15514	Soybean	nucleus	72.35	75.85
TraesCS1D01G357100.1	Wheat	mitochondrion	71.43	75.61
Zm00001d011732_P001	Maize	mitochondrion	69.59	75.5
Solyc11g070030.1.1	Tomato	plastid	71.89	73.24
HORVU3Hr1G068360.4	Barley	cytosol	68.66	68.66
Zm00001d043620_P001	Maize	mitochondrion	37.79	62.12
GSMUA_Achr6P26560_001	Banana	cytoskeleton, mitochondrion, plasma membrane	27.65	33.9

Protein Annotations

MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	EnsemblPlantsGene:Bra006117	EnsemblPlants:Bra006117.1	EnsemblPlants:Bra006117.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	UniProt:M4CPH9
HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995
PANTHER:PTHR11995:SF19	SUPFAM:SSF56770	TIGRFAMs:TIGR01957	UniParc:UPI000253F964	SEG:seg	:

Description

AT5G11770 (E=6e-089) | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial

Coordinates

chrA03:-:2088472..2090136

Molecular Weight (calculated)

24039.3 Da

IEP (calculated)

9.882

GRAVY (calculated)

-0.153

Length

217 amino acids

Sequence
(BLAST)

001: MAMITRNTVT RLPLLLQSQR AAAAVSHIHT SLPALSPSTT PTSYTRPGPP STSSPPPPGL SKTAELVISK VDDLMNWARR GSIWPMTFGL ACCAVEMMHT
101: GAARYDLDRF GIIFRPSPRQ SDCMIVAGTL TNKMAPALRK VYDQMPEPRW VISMGSCANG GGYYHYSYSV VRGCDRIVPV DIYVPGCPPT AEALLYGLLQ
201: LQKKINRRKD FLHWWNK

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.