CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78444	Canola	mitochondrion	98.16	98.16
Bra006117.1-P	Field mustard	mitochondrion	97.7	97.7
CDX69732	Canola	mitochondrion	95.85	96.3
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	58.06	95.45
CDY61439	Canola	mitochondrion	89.86	90.7
CDX97144	Canola	mitochondrion	88.02	88.84
AT5G11770.1	Thale cress	mitochondrion	88.94	88.53
VIT_04s0008g00830.t01	Wine grape	mitochondrion	76.5	79.43
KRH52179	Soybean	mitochondrion	77.88	79.34
KRH61494	Soybean	mitochondrion	77.42	78.87
Os05t0533700-01	Rice	mitochondrion	73.27	77.94
TraesCS3D01G287400.1	Wheat	mitochondrion	72.35	77.72
TraesCS3B01G322300.1	Wheat	golgi	72.35	77.72
TraesCS3A01G287600.1	Wheat	mitochondrion	72.35	77.72
EES18559	Sorghum	mitochondrion	72.35	77.72
TraesCS1A01G353000.1	Wheat	mitochondrion	69.59	77.44
Os01t0720300-00	Rice	mitochondrion	70.97	77.39
TraesCS1B01G368900.1	Wheat	mitochondrion	72.35	77.34
TraesCS1D01G357100.1	Wheat	mitochondrion	72.35	76.59
EES03536	Sorghum	mitochondrion	70.51	76.5
KRH15514	Soybean	nucleus	72.81	76.33
Zm00001d011732_P001	Maize	mitochondrion	70.05	76.0
Solyc11g070030.1.1	Tomato	plastid	72.35	73.71
HORVU3Hr1G068360.4	Barley	cytosol	69.12	69.12
Zm00001d043620_P001	Maize	mitochondrion	37.79	62.12
CDY15330	Canola	cytosol, extracellular, mitochondrion	11.98	36.11
GSMUA_Achr6P26560_001	Banana	cytoskeleton, mitochondrion, plasma membrane	27.65	33.9
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	27.65	26.67
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	27.65	26.67
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	27.65	26.67

Protein Annotations

MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	GO:A0A078C0F3	EnsemblPlants:CDX70421	ProteinID:CDX70421	ProteinID:CDX70421.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00140230001	HAMAP:MF_01356
InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF19
SUPFAM:SSF56770	TIGRFAMs:TIGR01957	UniParc:UPI0004EE8ED8	SEG:seg	:	:

Description

BnaC03g05050D

Coordinates

chrLK031791:-:347355..349238

Molecular Weight (calculated)

24075.3 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.185

Length

217 amino acids

Sequence
(BLAST)

001: MAMITRNTAT RLPLLLRSQR AAAAVSHIHT SLPSLSPSTS PTSYTRPGPP STSSPPPPGL SKTAEFVISK VDDLMNWARR GSIWPMTFGL ACCAVEMMHT
101: GAARYDLDRF GIIFRPSPRQ SDCMIVAGTL TNKMAPALRK VYDQMPEPRW VISMGSCANG GGYYHYSYSV VRGCDRIVPV DIYVPGCPPT AEALLYGLLQ
201: LQKKINRRKD FLHWWNK

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.