CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	100.0	100.0
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	100.0	100.0
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	97.78	97.78
HORVU0Hr1G032810.1	Barley	cytosol	34.22	90.59
Solyc01g007300.1.1	Tomato	nucleus	89.78	89.78
PGSC0003DMT400017976	Potato	plastid	82.67	87.74
HORVU0Hr1G036850.1	Barley	cytosol, extracellular, plastid	68.89	87.08
HORVU0Hr1G036360.3	Barley	cytosol, nucleus, plastid	84.89	84.89
HORVU4Hr1G045220.1	Barley	cytosol, nucleus, plastid	84.89	84.89
HORVU6Hr1G049240.1	Barley	cytosol, nucleus, plastid	84.89	84.89
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	84.44	84.44
EES03029	Sorghum	plastid	84.89	84.14
TraesCS1D01G181300.1	Wheat	plastid	84.0	84.0
HORVU5Hr1G064680.1	Barley	plastid	83.56	83.56
TraesCS1D01G205100.1	Wheat	cytosol, plastid	83.11	83.11
TraesCS1A01G384500.1	Wheat	plastid	77.78	82.94
TraesCS2D01G595600.1	Wheat	plastid	81.33	82.06
HORVU7Hr1G051200.1	Barley	cytosol	80.89	80.53
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	51.11	80.42
TraesCSU01G265100.1	Wheat	cytosol, mitochondrion, nucleus	51.11	80.42
CDY15330	Canola	cytosol, extracellular, mitochondrion	25.33	79.17
TraesCS4A01G152200.1	Wheat	cytosol, mitochondrion, nucleus	50.22	79.02
TraesCS1D01G136200.1	Wheat	cytosol, mitochondrion, nucleus	49.78	78.32
AGP50759	Barley	plastid	84.89	77.96
CAA34000	Rice	cytosol, mitochondrion, nucleus	84.89	77.64
TraesCS5D01G010600.1	Wheat	cytosol, mitochondrion	49.33	77.62
TraesCS1D01G171600.1	Wheat	cytosol	48.0	75.52
TraesCS1D01G169800.1	Wheat	cytosol, extracellular, mitochondrion	40.44	75.21
TraesCS7D01G255200.1	Wheat	cytosol	37.33	75.0
GRMZM5G800980_P01	Maize	plastid	84.89	74.9
KRH41779	Soybean	cytosol, mitochondrion, nucleus	21.78	72.06
Os03t0639233-00	Rice	cytosol	34.22	69.37
Os12t0423484-00	Rice	cytosol	24.89	69.14
TraesCS4A01G116600.1	Wheat	cytosol, plastid	28.44	68.09
Solyc06g036210.1.1	Tomato	mitochondrion	31.56	61.21
HORVU1Hr1G045390.1	Barley	cytosol	20.89	61.04
Os12t0423313-00	Rice	mitochondrion	18.22	44.57
CDY61439	Canola	mitochondrion	26.67	27.91
CDX97144	Canola	mitochondrion	26.67	27.91
CDX69732	Canola	mitochondrion	26.67	27.78
CDX78444	Canola	mitochondrion	26.67	27.65
CDX70421	Canola	mitochondrion	26.67	27.65

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	ProteinID:ACY66269.1	ProteinID:AIK29008.1	ProteinID:AIZ06084.1	ProteinID:AKD00093.1
ProteinID:ASY95019.1	EnsemblPlants:CDX98581	ProteinID:CDX98581	ProteinID:CDX98581.1	ProteinID:CDY38703.1	GO:D1L8P2
UniProt:D1L8P2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016491	GO:GO:0046872
GO:GO:0048038	GO:GO:0050136	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00106257001
HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995
PANTHER:PTHR11995:SF21	SUPFAM:SSF56770	TIGRFAMs:TIGR01957	UniParc:UPI0001BBFF97	SEG:seg	:

Description

BnaC05g37940DNADH-quinone oxidoreductase subunit B [Source:UniProtKB/TrEMBL;Acc:D1L8P2]

Coordinates

chrLK031905:+:1243291..1243968

Molecular Weight (calculated)

25364.6 Da

IEP (calculated)

9.488

GRAVY (calculated)

-0.218

Length

225 amino acids

Sequence
(BLAST)

001: MNSIKFPVLD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQR GNRCFTTNHK FFVVRSTQTG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.