CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0423484-00	Rice	cytosol	30.89	93.83
Os03t0639233-00	Rice	cytosol	39.43	87.39
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	77.64	84.89
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	77.64	84.89
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	77.64	84.89
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	76.83	84.0
Solyc01g007300.1.1	Tomato	nucleus	76.83	84.0
PGSC0003DMT400017976	Potato	plastid	71.95	83.49
CDY15330	Canola	cytosol, extracellular, mitochondrion	22.36	76.39
KRH41779	Soybean	cytosol, mitochondrion, nucleus	20.33	73.53
Os12t0423313-00	Rice	mitochondrion	21.95	58.7
Solyc06g036210.1.1	Tomato	mitochondrion	25.2	53.45
Os01t0720300-00	Rice	mitochondrion	25.2	31.16
Os05t0533700-01	Rice	mitochondrion	25.61	30.88

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	EnsemblPlants:CAA34000	EnsemblPlantsGene:CAA34000	ProteinID:CAA34000	ProteinID:CAA34000.1
GO:GO:0000312	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006091	GO:GO:0006810
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009521	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009767	GO:GO:0009772	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016020	GO:GO:0016168	GO:GO:0016491	GO:GO:0016655
GO:GO:0016984	GO:GO:0019684	GO:GO:0045156	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058
ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21	Reactome:R-HSA-611105	Reactome:R-HSA-6799198	SUPFAM:SSF56770
TIGRFAMs:TIGR01957	UniParc:UPI000013095B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrPt:-:48569..49309

Molecular Weight (calculated)

27682.5 Da

IEP (calculated)

9.552

GRAVY (calculated)

-0.258

Length

246 amino acids

Sequence
(BLAST)

001: MVLTEYSDKK KKEGKDSIKT VMSLIEFPLL DQRSSNSVIS TTLKDLSNWS RLSSLWPLLY GTSCCFIEFA SLIGSRFDFD RYGLVPRSSP RQADLILTAG
101: TVTMKMAPSL VRLYEQMPEP KYVIAMGACT ITGGMFSTDS YSTVRGVDKL IPVDVYLPGC PPKPEAVIDA LTKLRKKISR EIVEDRTLSQ KKNRCFTTSH
201: KLYVRRSTNT GTYEQELLYQ SPSTLDISSE TFFKSKSPVS SYKLVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.