Factsheet for PGSC0003DMT400017976

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G032810.1	Barley	cytosol	36.79	91.76
Solyc01g007300.1.1	Tomato	nucleus	94.81	89.33
HORVU0Hr1G036850.1	Barley	cytosol, extracellular, plastid	74.06	88.2
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	87.74	82.67
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	87.74	82.67
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	87.74	82.67
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	87.26	82.22
HORVU0Hr1G036360.3	Barley	cytosol, nucleus, plastid	84.91	80.0
HORVU4Hr1G045220.1	Barley	cytosol, nucleus, plastid	84.91	80.0
HORVU6Hr1G049240.1	Barley	cytosol, nucleus, plastid	84.91	80.0
TraesCS1D01G181300.1	Wheat	plastid	84.91	80.0
HORVU7Hr1G051200.1	Barley	cytosol	84.91	79.65
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	84.43	79.56
HORVU5Hr1G064680.1	Barley	plastid	83.49	78.67
TraesCS2D01G595600.1	Wheat	plastid	82.55	78.48
EES03029	Sorghum	plastid	83.49	77.97
TraesCS1D01G205100.1	Wheat	cytosol, plastid	82.55	77.78
TraesCS1A01G384500.1	Wheat	plastid	77.36	77.73
CDY15330	Canola	cytosol, extracellular, mitochondrion	25.94	76.39
KRH41779	Soybean	cytosol, mitochondrion, nucleus	24.06	75.0
AGP50759	Barley	plastid	84.91	73.47
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	49.06	72.73
TraesCSU01G265100.1	Wheat	cytosol, mitochondrion, nucleus	49.06	72.73
CAA34000	Rice	cytosol, mitochondrion, nucleus	83.49	71.95
TraesCS1D01G136200.1	Wheat	cytosol, mitochondrion, nucleus	47.64	70.63
TraesCS4A01G152200.1	Wheat	cytosol, mitochondrion, nucleus	47.64	70.63
TraesCS5D01G010600.1	Wheat	cytosol, mitochondrion	47.17	69.93
GRMZM5G800980_P01	Maize	plastid	83.49	69.41
Os12t0423484-00	Rice	cytosol	25.94	67.9
TraesCS1D01G171600.1	Wheat	cytosol	45.75	67.83
TraesCS1D01G169800.1	Wheat	cytosol, extracellular, mitochondrion	37.74	66.12
TraesCS7D01G255200.1	Wheat	cytosol	34.43	65.18
Os03t0639233-00	Rice	cytosol	31.13	59.46
TraesCS4A01G116600.1	Wheat	cytosol, plastid	25.0	56.38
HORVU1Hr1G045390.1	Barley	cytosol	16.98	46.75
Os12t0423313-00	Rice	mitochondrion	18.87	43.48

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	EntrezGene:4099978	wikigene:4099978	ProteinID:ABB90045	ProteinID:ABB90045.1
ProteinID:ABD47061	ProteinID:ABD47061.1	ProteinID:AEB72143	ProteinID:AEB72143.1	ProteinID:AEB72229	ProteinID:AEB72229.1
EMBL:DQ231562	EMBL:DQ386163	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016655	GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	GO:GO:0070469	EMBL:JF772170	EMBL:JF772171	UniProt:M1A9U8
HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	EnsemblPlantsGene:PGSC0003DMG400006986	PGSC:PGSC0003DMG400006986
EnsemblPlants:PGSC0003DMT400017976	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21	SUPFAM:SSF56770	TIGRFAMs:TIGR01957
UniParc:UPI000294DFFB	EntrezGene:ndhK	wikigene:ndhK	:	:	:

Description

NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400006986]

Coordinates

chr5:-:45692715..45693353

Molecular Weight (calculated)

24156.2 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.265

Length

212 amino acids

Sequence
(BLAST)

001: MNSIQFPLLD RTAPNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QSDLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKISRE LYEDRIRSQR ANRCFTTNHK FHVRRSIHTG NYDQRVLYQP
201: YIKHLNSRTT FD

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.