Factsheet for TraesCS1D01G136200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G255200.1	Wheat	cytosol	76.22	97.32
TraesCSU01G265100.1	Wheat	cytosol, mitochondrion, nucleus	96.5	96.5
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	96.5	96.5
TraesCS5D01G010600.1	Wheat	cytosol, mitochondrion	95.1	95.1
TraesCS4A01G152200.1	Wheat	cytosol, mitochondrion, nucleus	94.41	94.41
TraesCS1D01G169800.1	Wheat	cytosol, extracellular, mitochondrion	79.72	94.21
TraesCS1D01G171600.1	Wheat	cytosol	92.31	92.31
CDY15330	Canola	cytosol, extracellular, mitochondrion	36.36	72.22
KRH41779	Soybean	cytosol, mitochondrion, nucleus	33.57	70.59
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	96.5	61.33
TraesCS1D01G181300.1	Wheat	plastid	94.41	60.0
TraesCS1D01G205100.1	Wheat	cytosol, plastid	94.41	60.0
TraesCS2D01G595600.1	Wheat	plastid	88.81	56.95
Solyc06g036210.1.1	Tomato	mitochondrion	41.96	51.72
Solyc01g007300.1.1	Tomato	nucleus	79.02	50.22
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	78.32	49.78
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	78.32	49.78
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	78.32	49.78
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	77.62	49.33
PGSC0003DMT400017976	Potato	plastid	70.63	47.64
TraesCS3D01G287400.1	Wheat	mitochondrion	25.87	18.32
TraesCS1D01G357100.1	Wheat	mitochondrion	25.87	18.05

Protein Annotations

EnsemblPlants:TraesCS1D01G136200.1	EnsemblPlantsGene:TraesCS1D01G136200	Gene3D:3.40.50.12280	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21	PFAM:PF01058
ScanProsite:PS01150	SUPFAM:SSF56770	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1D:+:180357007..180357438

Molecular Weight (calculated)

16282.7 Da

IEP (calculated)

9.648

GRAVY (calculated)

-0.474

Length

143 amino acids

Sequence
(BLAST)

001: MKMDPSLVRL YEQMPEPKYV IAMGAYTITG GMFSTDSYST VRGVDKLIPV DVYLPGCPPK PEAVIDSLKK LRKKISREIV EDRTLSQNKN RCFTTSHKLY
101: VRRSTHTGTY EQELLYQSPS TLDISSETFF KSKSSVPSYK LVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.