Factsheet for TraesCS1D01G181300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G384500.1	Wheat	plastid	92.0	98.1
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	97.33	97.33
TraesCS7D01G255200.1	Wheat	cytosol	48.0	96.43
TraesCS1D01G205100.1	Wheat	cytosol, plastid	95.11	95.11
EES03029	Sorghum	plastid	95.56	94.71
TraesCS1D01G136200.1	Wheat	cytosol, mitochondrion, nucleus	60.0	94.41
TraesCS1D01G169800.1	Wheat	cytosol, extracellular, mitochondrion	50.67	94.21
TraesCS2D01G595600.1	Wheat	plastid	92.89	93.72
TraesCS5D01G010600.1	Wheat	cytosol, mitochondrion	59.56	93.71
TraesCS1D01G171600.1	Wheat	cytosol	57.78	90.91
Os12t0423484-00	Rice	cytosol	32.44	90.12
PGSC0003DMT400017976	Potato	plastid	80.0	84.91
GRMZM5G800980_P01	Maize	plastid	95.56	84.31
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	84.0	84.0
Solyc01g007300.1.1	Tomato	nucleus	84.0	84.0
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	84.0	84.0
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	84.0	84.0
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	83.56	83.56
CDY15330	Canola	cytosol, extracellular, mitochondrion	24.44	76.39
KRH41779	Soybean	cytosol, mitochondrion, nucleus	22.22	73.53
Solyc06g036210.1.1	Tomato	mitochondrion	27.11	52.59
TraesCS3D01G287400.1	Wheat	mitochondrion	26.67	29.7
TraesCS1D01G357100.1	Wheat	mitochondrion	26.67	29.27

Protein Annotations

EnsemblPlants:TraesCS1D01G181300.1	EnsemblPlantsGene:TraesCS1D01G181300	Gene3D:3.40.50.12280	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21
PFAM:PF01058	ScanProsite:PS01150	SUPFAM:SSF56770	TIGRFAMs:TIGR01957	MapMan:1.1.8.1.2.4	:

Description

No Description!

Coordinates

chr1D:-:254475954..254476631

Molecular Weight (calculated)

25328.5 Da

IEP (calculated)

8.902

GRAVY (calculated)

-0.187

Length

225 amino acids

Sequence
(BLAST)

001: MNLIEFPLLD QTSSNSVIST TPNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YIIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAL TKLRKKISRE IFEDRTLSQN KNRCFTTSHK LYVRRSTHTG TYEQELLYQS
201: LSKLDISSET FFKSKSSVPS YKLVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.