Factsheet for GRMZM5G800980_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

plastid: 20089766
plastid: 21196305
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03029	Sorghum	plastid	89.02	100.0
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	84.71	96.0
TraesCS1A01G384500.1	Wheat	plastid	79.22	95.73
TraesCS1D01G181300.1	Wheat	plastid	84.31	95.56
TraesCS1D01G205100.1	Wheat	cytosol, plastid	83.53	94.67
TraesCS2D01G595600.1	Wheat	plastid	81.57	93.27
Os12t0423484-00	Rice	cytosol	28.63	90.12
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	74.9	84.89
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	74.9	84.89
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	74.9	84.89
Solyc01g007300.1.1	Tomato	nucleus	74.51	84.44
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	74.51	84.44
PGSC0003DMT400017976	Potato	plastid	69.41	83.49
CDY15330	Canola	cytosol, extracellular, mitochondrion	21.96	77.78
KRH41779	Soybean	cytosol, mitochondrion, nucleus	19.61	73.53
Solyc06g036210.1.1	Tomato	mitochondrion	24.31	53.45
Zm00001d043619_P001	Maize	cytosol	14.9	45.24
Zm00001d011732_P001	Maize	mitochondrion	24.31	31.0
Zm00001d043620_P001	Maize	mitochondrion	11.37	21.97

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006091
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016655
GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0050136	GO:GO:0051536	GO:GO:0051539
GO:GO:0055114	EnsemblPlantsGene:GRMZM5G800980	EnsemblPlants:GRMZM5G800980_P01	EnsemblPlants:GRMZM5G800980_T01	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su
InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21	SUPFAM:SSF56770
TIGRFAMs:TIGR01957	UniParc:UPI000220E715	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrPt:-:50535..52367

Molecular Weight (calculated)

28593.6 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.263

Length

255 amino acids

Sequence
(BLAST)

001: MAKRSLGMVL TEYSEKKKKE GKDSIGTIMS LIEFPLLDQT SSNSVISTTP NDLSNWSRLS SLWPLLYGTS CCFIEFASLI GSRFDFDRYG LVPRSSPRQA
101: DLILTAGTVT MKMAPSLVRL YEQMPEPKYV IAMGACTITG GMFSTDSYST VRGVDKLIPV DVYLPGCPPK PEAVIDALTK LRKKIAREII EDRTLCQSQK
201: KNRSFTTRHK LYVRRSTHTG TYEQELLYQS PSTLDISSET FFKSKSSVSS YKLVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.