CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	95.15	96.0
TraesCS1A01G384500.1	Wheat	plastid	88.99	95.73
TraesCS1D01G181300.1	Wheat	plastid	94.71	95.56
TraesCS1D01G205100.1	Wheat	cytosol, plastid	93.83	94.67
TraesCS2D01G595600.1	Wheat	plastid	91.63	93.27
Os12t0423484-00	Rice	cytosol	32.16	90.12
GRMZM5G800980_P01	Maize	plastid	100.0	89.02
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	84.14	84.89
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	84.14	84.89
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	84.14	84.89
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	83.7	84.44
Solyc01g007300.1.1	Tomato	nucleus	83.7	84.44
PGSC0003DMT400017976	Potato	plastid	77.97	83.49
CDY15330	Canola	cytosol, extracellular, mitochondrion	24.67	77.78
KRH41779	Soybean	cytosol, mitochondrion, nucleus	22.03	73.53
Solyc06g036210.1.1	Tomato	mitochondrion	27.31	53.45
EES18559	Sorghum	mitochondrion	28.19	31.68
EES03536	Sorghum	mitochondrion	27.31	31.0

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	EntrezGene:4549197	ProteinID:ABK79500.1	UniProt:C5XLG2	EnsemblPlants:EES03029
ProteinID:EES03029	ProteinID:EES03029.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016491
GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114	HAMAP:MF_01356
InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21
EnsemblPlantsGene:SORBI_3003G172966	SUPFAM:SSF56770	TIGRFAMs:TIGR01957	UniParc:UPI00015A2075	RefSeq:XP_002457909.1	RefSeq:YP_899411.2
SEG:seg	:	:	:	:	:

Description

ndhKhypothetical protein

Coordinates

chr3:-:38372516..38373199

Molecular Weight (calculated)

25482.7 Da

IEP (calculated)

9.117

GRAVY (calculated)

-0.199

Length

227 amino acids

Sequence
(BLAST)

001: MSLIEFPLLD QTSSNSVIST TPNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAL TKLRKKIARE IIEDRTLCQS QKKNRSFTTR HKLYVRRSTH TGTYEQELLY
201: QSPSTLDISS ETFFKSKSSV SSYKLVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.