Factsheet for Solyc01g007300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017976	Potato	plastid	89.33	94.81
HORVU0Hr1G032810.1	Barley	cytosol	34.67	91.76
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	89.78	89.78
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	89.78	89.78
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	89.78	89.78
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	89.33	89.33
HORVU0Hr1G036850.1	Barley	cytosol, extracellular, plastid	69.78	88.2
TraesCS5D01G459000.1	Wheat	cytosol, nucleus, plastid	84.89	84.89
HORVU0Hr1G036360.3	Barley	cytosol, nucleus, plastid	84.44	84.44
HORVU4Hr1G045220.1	Barley	cytosol, nucleus, plastid	84.44	84.44
HORVU6Hr1G049240.1	Barley	cytosol, nucleus, plastid	84.44	84.44
TraesCS1D01G181300.1	Wheat	plastid	84.0	84.0
EES03029	Sorghum	plastid	84.44	83.7
TraesCS1D01G205100.1	Wheat	cytosol, plastid	83.56	83.56
TraesCS1A01G384500.1	Wheat	plastid	78.22	83.41
HORVU5Hr1G064680.1	Barley	plastid	83.11	83.11
TraesCS2D01G595600.1	Wheat	plastid	81.33	82.06
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	51.56	81.12
TraesCSU01G265100.1	Wheat	cytosol, mitochondrion, nucleus	51.56	81.12
HORVU7Hr1G051200.1	Barley	cytosol	81.33	80.97
TraesCS4A01G152200.1	Wheat	cytosol, mitochondrion, nucleus	50.22	79.02
TraesCS1D01G136200.1	Wheat	cytosol, mitochondrion, nucleus	50.22	79.02
TraesCS5D01G010600.1	Wheat	cytosol, mitochondrion	49.78	78.32
AGP50759	Barley	plastid	84.44	77.55
CAA34000	Rice	cytosol, mitochondrion, nucleus	84.0	76.83
Solyc06g036210.1.1	Tomato	mitochondrion	39.56	76.72
CDY15330	Canola	cytosol, extracellular, mitochondrion	24.44	76.39
TraesCS1D01G171600.1	Wheat	cytosol	48.44	76.22
TraesCS1D01G169800.1	Wheat	cytosol, extracellular, mitochondrion	40.89	76.03
TraesCS7D01G255200.1	Wheat	cytosol	37.78	75.89
KRH41779	Soybean	cytosol, mitochondrion, nucleus	22.67	75.0
GRMZM5G800980_P01	Maize	plastid	84.44	74.51
Solyc02g063080.1.1	Tomato	cytosol, extracellular, mitochondrion	21.33	70.59
Os12t0423484-00	Rice	cytosol	25.33	70.37
TraesCS4A01G116600.1	Wheat	cytosol, plastid	28.89	69.15
Os03t0639233-00	Rice	cytosol	33.78	68.47
HORVU1Hr1G045390.1	Barley	cytosol	20.44	59.74
Os12t0423313-00	Rice	mitochondrion	18.22	44.57
Solyc11g070030.1.1	Tomato	plastid	27.11	28.64

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	ProteinID:ABC56304.1	ProteinID:CAJ32397.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016655	GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058
ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21	UniProt:Q2MI96	SUPFAM:SSF56770	EnsemblPlantsGene:Solyc01g007300.1
EnsemblPlants:Solyc01g007300.1.1	TIGRFAMs:TIGR01957	UniParc:UPI000186C918	:	:	:

Description

ndhKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q2MI96]

Coordinates

chr1:-:1846093..1846770

Molecular Weight (calculated)

25449.6 Da

IEP (calculated)

9.333

GRAVY (calculated)

-0.230

Length

225 amino acids

Sequence
(BLAST)

001: MNSIQFPLLD RTAPNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QSDLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKISRE LYEDRIRSQR ANRCFTTNHK FHVRRSIHTG NYDQRVLYQP
201: PSTSEIPTEI FFKYKNSVSS AELVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.