Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G045390.1 | Barley | cytosol | 70.21 | 85.71 |
| TraesCS7D01G255200.1 | Wheat | cytosol | 95.74 | 80.36 |
| Os03t0639233-00 | Rice | cytosol | 80.85 | 68.47 |
| TraesCS4A01G152200.1 | Wheat | cytosol, mitochondrion, nucleus | 96.81 | 63.64 |
| Os12t0423313-00 | Rice | mitochondrion | 53.19 | 54.35 |
| Solyc06g036210.1.1 | Tomato | mitochondrion | 61.7 | 50.0 |
| KRH41779 | Soybean | cytosol, mitochondrion, nucleus | 31.91 | 44.12 |
| TraesCS1A01G384500.1 | Wheat | plastid | 96.81 | 43.13 |
| CDY15330 | Canola | cytosol, extracellular, mitochondrion | 27.66 | 36.11 |
| Solyc01g007300.1.1 | Tomato | nucleus | 69.15 | 28.89 |
| CDY38703 | Canola | mitochondrion, nucleus, plasma membrane, plastid | 68.09 | 28.44 |
| CDX99948 | Canola | mitochondrion, nucleus, plasma membrane, plastid | 68.09 | 28.44 |
| CDX98581 | Canola | mitochondrion, nucleus, plasma membrane, plastid | 68.09 | 28.44 |
| ATCG00430.1 | Thale cress | cytosol, mitochondrion, nucleus | 67.02 | 28.0 |
| PGSC0003DMT400017976 | Potato | plastid | 56.38 | 25.0 |
| TraesCS1A01G353000.1 | Wheat | mitochondrion | 14.89 | 7.18 |
| TraesCS3A01G287600.1 | Wheat | mitochondrion | 14.89 | 6.93 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G116600.1 | EnsemblPlantsGene:TraesCS4A01G116600 | Gene3D:3.40.50.12280 | PANTHER:PTHR11995 | PANTHER:PTHR11995:SF21 | SUPFAM:SSF56770 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:141129197..141129481
Molecular Weight (calculated)
10741.9 Da
IEP (calculated)
9.911
GRAVY (calculated)
-0.561
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MDVYLPGCPP KPVAVIDALT KLRKKISREI VEDRTLSQNK NKCFTTSHKL YVRRSTHTGT YEQELLYQSP STLDISSETF FKSKSSVPSY KLVN
001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN
Arabidopsis Description
NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.