Factsheet for TraesCS4A01G152200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G116600.1	Wheat	cytosol, plastid	63.64	96.81
TraesCSU01G265100.1	Wheat	cytosol, mitochondrion, nucleus	96.5	96.5
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	96.5	96.5
TraesCS5D01G010600.1	Wheat	cytosol, mitochondrion	94.41	94.41
TraesCS1D01G136200.1	Wheat	cytosol, mitochondrion, nucleus	94.41	94.41
HORVU0Hr1G032810.1	Barley	cytosol	55.94	94.12
TraesCS1D01G171600.1	Wheat	cytosol	92.31	92.31
CDY15330	Canola	cytosol, extracellular, mitochondrion	36.36	72.22
KRH41779	Soybean	cytosol, mitochondrion, nucleus	33.57	70.59
HORVU5Hr1G064680.1	Barley	plastid	95.8	60.89
HORVU6Hr1G049240.1	Barley	cytosol, nucleus, plastid	95.1	60.44
HORVU4Hr1G045220.1	Barley	cytosol, nucleus, plastid	95.1	60.44
HORVU0Hr1G036360.3	Barley	cytosol, nucleus, plastid	95.1	60.44
TraesCS1A01G384500.1	Wheat	plastid	88.11	59.72
AGP50759	Barley	plastid	95.1	55.51
HORVU7Hr1G051200.1	Barley	cytosol	86.71	54.87
Solyc06g036210.1.1	Tomato	mitochondrion	42.66	52.59
Solyc01g007300.1.1	Tomato	nucleus	79.02	50.22
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	79.02	50.22
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	79.02	50.22
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	79.02	50.22
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	78.32	49.78
PGSC0003DMT400017976	Potato	plastid	70.63	47.64
HORVU0Hr1G036850.1	Barley	cytosol, extracellular, plastid	56.64	45.51
TraesCS1A01G353000.1	Wheat	mitochondrion	26.57	19.49
TraesCS3A01G287600.1	Wheat	mitochondrion	26.57	18.81

Protein Annotations

EnsemblPlants:TraesCS4A01G152200.1	EnsemblPlantsGene:TraesCS4A01G152200	Gene3D:3.40.50.12280	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0051536	GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PANTHER:PTHR11995	PANTHER:PTHR11995:SF21
PFAM:PF01058	SUPFAM:SSF56770	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:+:309375004..309375435

Molecular Weight (calculated)

16266.8 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.390

Length

143 amino acids

Sequence
(BLAST)

001: MKMAPSLVRL YEQMPEPKYV IAMGACTITW GMFGTDSYST VRGVDKLIPM DVYLPGCPPK PEAVIDALTK LRKKISREIV EDRTLSQNKN RCFTTSHKLY
101: VRRSTHTGTY EQELLYKSPS TLDISSETFF KSKSSVPSYK LVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.