CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21440687

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G049240.1	Barley	cytosol, nucleus, plastid	91.84	100.0
HORVU4Hr1G045220.1	Barley	cytosol, nucleus, plastid	91.84	100.0
HORVU0Hr1G036360.3	Barley	cytosol, nucleus, plastid	91.84	100.0
HORVU5Hr1G064680.1	Barley	plastid	90.61	98.67
HORVU0Hr1G032810.1	Barley	cytosol	33.88	97.65
TraesCSU01G265100.1	Wheat	cytosol, mitochondrion, nucleus	56.73	97.2
TraesCS3B01G185700.1	Wheat	cytosol, mitochondrion, nucleus	56.73	97.2
HORVU1Hr1G045390.1	Barley	cytosol	30.2	96.1
TraesCS4A01G152200.1	Wheat	cytosol, mitochondrion, nucleus	55.51	95.1
HORVU0Hr1G036850.1	Barley	cytosol, extracellular, plastid	68.16	93.82
HORVU7Hr1G051200.1	Barley	cytosol	86.12	93.36
HORVU2Hr1G035340.2	Barley	cytosol, mitochondrion, nucleus	17.14	91.3
PGSC0003DMT400017976	Potato	plastid	73.47	84.91
CDY38703	Canola	mitochondrion, nucleus, plasma membrane, plastid	77.96	84.89
CDX99948	Canola	mitochondrion, nucleus, plasma membrane, plastid	77.96	84.89
CDX98581	Canola	mitochondrion, nucleus, plasma membrane, plastid	77.96	84.89
Solyc01g007300.1.1	Tomato	nucleus	77.55	84.44
ATCG00430.1	Thale cress	cytosol, mitochondrion, nucleus	77.55	84.44
CDY15330	Canola	cytosol, extracellular, mitochondrion	22.45	76.39
KRH41779	Soybean	cytosol, mitochondrion, nucleus	20.41	73.53
Solyc06g036210.1.1	Tomato	mitochondrion	24.49	51.72
HORVU3Hr1G068360.4	Barley	cytosol	24.9	28.11

Protein Annotations

MapMan:1.1.8.1.2.4	Gene3D:3.40.50.12280	EntrezGene:4525141	EnsemblPlants:AGP50759	EnsemblPlantsGene:AGP50759	ProteinID:AGP50759
ProteinID:AGP50759.1	ProteinID:AMA20250.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006810
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491	GO:GO:0016655
GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
ENA:KC912687.1:CDS:complement(48825..49562)	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su	InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150
PANTHER:PTHR11995	PANTHER:PTHR11995:SF21	GO:S4YYJ7	UniProt:S4YYJ7	SUPFAM:SSF56770	TIGRFAMs:TIGR01957
UniParc:UPI000005FA9D	RefSeq:YP_874657.1	:	:	:	:

Description

ndhKNADH-plastoquinone oxidoreductase subunit K

Coordinates

chrPt:-:48825..49562

Molecular Weight (calculated)

27538.3 Da

IEP (calculated)

8.663

GRAVY (calculated)

-0.215

Length

245 amino acids

Sequence
(BLAST)

001: MVLTEYLDKK KEGKDSIETV MNLIEFPLLD QTSSNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT
101: VTMKMAPSLV RLYEQMPEPK YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAL TKLRKKISRE IVEDRTLSQN KKRCFTTSHK
201: LYVRRSTHTG TYEQELLYQS PSTLDISSET FLKSKSPVPS YKLVN

Best Arabidopsis Sequence Match ( ATCG00430.1 )
(BLAST)

001: MNSIKFPILD RTTKNSVIST TLNDLSNWSR LSSLWPLLYG TSCCFIEFAS LIGSRFDFDR YGLVPRSSPR QADLILTAGT VTMKMAPSLV RLYEQMPEPK
101: YVIAMGACTI TGGMFSTDSY STVRGVDKLI PVDVYLPGCP PKPEAVIDAI TKLRKKIARE IYKDRIRPQQ GNRCFTTNHK FFVVRSPHIG NYDQELLYPP
201: SSTSEISTET FFKYKSPVSS HELVN

Arabidopsis Description

NDHKNAD(P)H-quinone oxidoreductase subunit K, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4U5]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.