Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytoskeleton
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P11570_001 | Banana | cytosol, mitochondrion, plastid | 33.9 | 45.45 |
| Os05t0533700-01 | Rice | mitochondrion | 35.59 | 30.88 |
| VIT_04s0008g00830.t01 | Wine grape | mitochondrion | 33.9 | 28.71 |
| KRH61494 | Soybean | mitochondrion | 33.9 | 28.17 |
| KRH52179 | Soybean | mitochondrion | 33.9 | 28.17 |
| KRH15514 | Soybean | nucleus | 32.77 | 28.02 |
| CDY61439 | Canola | mitochondrion | 33.9 | 27.91 |
| CDX97144 | Canola | mitochondrion | 33.9 | 27.91 |
| CDX69732 | Canola | mitochondrion | 33.9 | 27.78 |
| Bra008938.1-P | Field mustard | mitochondrion | 33.9 | 27.78 |
| Solyc11g070030.1.1 | Tomato | plastid | 33.33 | 27.7 |
| CDX78444 | Canola | mitochondrion | 33.9 | 27.65 |
| CDX70421 | Canola | mitochondrion | 33.9 | 27.65 |
| Bra023341.1-P | Field mustard | mitochondrion | 33.9 | 27.65 |
| Bra006117.1-P | Field mustard | mitochondrion | 33.9 | 27.65 |
| AT5G11770.1 | Thale cress | mitochondrion | 33.9 | 27.52 |
| KRH15515 | Soybean | mitochondrion | 23.73 | 25.77 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P26560_001 | EnsemblPlants:GSMUA_Achr6T26560_001 | EnsemblPlantsGene:GSMUA_Achr6G26560_001 | Gene3D:3.40.50.12280 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 |
| GO:GO:0055114 | PANTHER:PTHR11995 | PANTHER:PTHR11995:SF19 | SEG:seg | SUPFAM:SSF56770 | TMHMM:TMhelix |
| UniParc:UPI000296A781 | UniProt:M0TAF1 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26560_001]
Coordinates
chr6:+:27267685..27270670
Molecular Weight (calculated)
19604.3 Da
IEP (calculated)
8.589
GRAVY (calculated)
0.426
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFGLACCAV EIMHTGASLY DFDRFGGIFR PSPHQSDCMI VAGTLTNKMA PALRKVYDQM PEPRWPWAVV QMVVGIIITR ILLYAAVTEL FPSTSMFLDV
101: LLQPRLYFTA SSSSRRRSTG ARISFFGGPS RGGVHIINGS LLCMCLIKAT MLRLSHCFCF EGITDNFHPA VCTNIIL
101: LLQPRLYFTA SSSSRRRSTG ARISFFGGPS RGGVHIINGS LLCMCLIKAT MLRLSHCFCF EGITDNFHPA VCTNIIL
001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.