Factsheet for VIT_04s0008g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11570_001	Banana	cytosol, mitochondrion, plastid	59.81	94.7
KRH52179	Soybean	mitochondrion	84.21	82.63
CDY61439	Canola	mitochondrion	79.9	77.67
CDX97144	Canola	mitochondrion	79.9	77.67
TraesCS3D01G287400.1	Wheat	mitochondrion	74.64	77.23
TraesCS3A01G287600.1	Wheat	mitochondrion	74.64	77.23
TraesCS3B01G322300.1	Wheat	golgi	74.64	77.23
Solyc11g070030.1.1	Tomato	plastid	78.47	77.0
Bra023341.1-P	Field mustard	mitochondrion	79.9	76.96
Bra008938.1-P	Field mustard	mitochondrion	79.43	76.85
CDX70421	Canola	mitochondrion	79.43	76.5
CDX69732	Canola	mitochondrion	78.95	76.39
TraesCS1B01G368900.1	Wheat	mitochondrion	74.16	76.35
CDX78444	Canola	mitochondrion	78.95	76.04
Os01t0720300-00	Rice	mitochondrion	72.25	75.88
EES18559	Sorghum	mitochondrion	73.21	75.74
Bra006117.1-P	Field mustard	mitochondrion	78.47	75.58
EES03536	Sorghum	mitochondrion	72.25	75.5
Os05t0533700-01	Rice	mitochondrion	73.68	75.49
Zm00001d011732_P001	Maize	mitochondrion	71.77	75.0
AT5G11770.1	Thale cress	mitochondrion	77.99	74.77
TraesCS1D01G357100.1	Wheat	mitochondrion	72.73	74.15
TraesCS1A01G353000.1	Wheat	mitochondrion	68.9	73.85
HORVU3Hr1G068360.4	Barley	cytosol	71.29	68.66
Zm00001d043620_P001	Maize	mitochondrion	35.41	56.06
GSMUA_Achr6P26560_001	Banana	cytoskeleton, mitochondrion, plasma membrane	28.71	33.9

Protein Annotations

EntrezGene:100262767	wikigene:100262767	MapMan:2.4.1.2.3	Gene3D:3.40.50.12280	EMBL:AM439835	ProteinID:CAN67285
ProteinID:CAN67285.1	ProteinID:CCB46549	ProteinID:CCB46549.1	UniProt:F6H393	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016491	GO:GO:0016655	GO:GO:0019684	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536
GO:GO:0051539	GO:GO:0055114	EntrezGene:LOC100262767	wikigene:LOC100262767	HAMAP:MF_01356	InterPro:NADH_UQ_OxRdtase_20Kd_su
InterPro:NADH_UbQ_OxRdtase-like_20kDa	PFAM:PF01058	ScanProsite:PS01150	PANTHER:PTHR11995	PANTHER:PTHR11995:SF19	SUPFAM:SSF56770
TIGR:TC64663	TIGRFAMs:TIGR01957	UniParc:UPI00015C8847	ArrayExpress:VIT_04s0008g00830	EnsemblPlantsGene:VIT_04s0008g00830	EnsemblPlants:VIT_04s0008g00830.t01
RefSeq:XP_002277483	RefSeq:XP_002277483.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:710301..715145

Molecular Weight (calculated)

23051.0 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.079

Length

209 amino acids

Sequence
(BLAST)

001: MALLTRTSRL ALTAPQRIAA LHTTLPSLSS ESAAPAPYSR APPPSSTSPA GLSKAAEFVI SKVDDLLNWA RRGSIWPMTF GLACCAVEMM HTGAARYDLD
101: RFGIIFRPSP RQSDCMIVAG TLTNKMAPAL RKVYDQMPEP RWVVSMGSCA NGGGYYHYSY SVVRGCDRIV PVDIYVPGCP PTAEALLYGL LQLQKKINRR
201: KDFLHWWTQ

Best Arabidopsis Sequence Match ( AT5G11770.1 )
(BLAST)

001: MAMITRNTAT RLPLLLQSQR AVAAASVSHL HTSLPALSPS TSPTSYTRPG PPSTSPPPPG LSKAAEFVIS KVDDLMNWAR TGSIWPMTFG LACCAVEMMH
101: TGAARYDLDR FGIIFRPSPR QSDCMIVAGT LTNKMAPALR KVYDQMPEPR WVISMGSCAN GGGYYHYSYS VVRGCDRIVP VDIYVPGCPP TAEALLYGLL
201: QLQKKINRRK DFLHWWNK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q42577]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.