CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 7
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56161	Canola	mitochondrion	80.12	78.24
Bra029106.1-P	Field mustard	mitochondrion	79.52	77.65
CDY51827	Canola	mitochondrion	79.52	77.65
CDY27044	Canola	mitochondrion	78.92	77.51
VIT_16s0050g01490.t01	Wine grape	mitochondrion	78.92	77.51
Bra022613.1-P	Field mustard	mitochondrion	78.31	76.92
CDX96158	Canola	mitochondrion	75.3	76.69
AT5G52840.1	Thale cress	mitochondrion	77.71	76.33
CDY50398	Canola	mitochondrion	77.71	76.33
Bra003109.1-P	Field mustard	mitochondrion	77.11	75.74
Solyc03g007660.2.1	Tomato	plastid	76.51	72.99
CDY49161	Canola	mitochondrion	54.22	72.0
Solyc06g036350.2.1	Tomato	nucleus	75.9	72.0
PGSC0003DMT400074367	Potato	mitochondrion	74.7	70.86
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	67.47	70.0
GSMUA_Achr11P...	Banana	mitochondrion	69.88	66.67
HORVU4Hr1G052890.1	Barley	mitochondrion	43.37	66.06
TraesCS4B01G180700.1	Wheat	golgi	68.07	65.32
EER94961	Sorghum	mitochondrion	67.47	64.74
Zm00001d028918_P001	Maize	mitochondrion	67.47	64.74
Os03t0313000-01	Rice	mitochondrion, plastid	66.87	64.16
TraesCS4A01G123600.1	Wheat	mitochondrion	66.87	64.16
HORVU4Hr1G052900.7	Barley	mitochondrion	68.07	56.22
AT4G28005.1	Thale cress	mitochondrion	38.55	55.65

Protein Annotations

EntrezGene:100526984	MapMan:2.4.1.4.1.2	EMBL:ACUP02005794	EMBL:BT091791	UniProt:C6T2Y2	InterPro:ETC_CI_29_9
EnsemblPlantsGene:GLYMA_09G129000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	EnsemblPlants:KRH38334	ProteinID:KRH38334
ProteinID:KRH38334.1	PFAM:PF04716	PANTHER:PTHR12653	UniParc:UPI0001B1526F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:32327263..32330497

Molecular Weight (calculated)

18622.2 Da

IEP (calculated)

4.669

GRAVY (calculated)

-0.478

Length

166 amino acids

Sequence
(BLAST)

001: MFLRAVARPL MAKVKASTGI VGLDVVPNAR EVLIGLYSKT LKEIQKVPED EGYRKAVESF TKHRLGVCKE EEDWENIEKR LGCGQVEELI EEAQDELKLI
101: SYMIEWDPWG VPDDYECEVI ENDAPVPKHV PLHRPPPLPT EFHKTLEALT GKDTPAASSS ESPSKA

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.