Factsheet for TraesCS4D01G182200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G052890.1	Barley	mitochondrion	65.0	95.41
TraesCS4B01G180700.1	Wheat	golgi	98.75	91.33
TraesCS4A01G123600.1	Wheat	mitochondrion	96.25	89.02
EER94961	Sorghum	mitochondrion	91.88	84.97
Os03t0313000-01	Rice	mitochondrion, plastid	91.25	84.39
Zm00001d028918_P001	Maize	mitochondrion	90.0	83.24
HORVU4Hr1G052900.7	Barley	mitochondrion	96.88	77.11
GSMUA_Achr11P...	Banana	mitochondrion	78.75	72.41
Bra003109.1-P	Field mustard	mitochondrion	74.38	70.41
CDY50398	Canola	mitochondrion	73.75	69.82
CDY56161	Canola	mitochondrion	73.75	69.41
Bra029106.1-P	Field mustard	mitochondrion	73.75	69.41
AT5G52840.1	Thale cress	mitochondrion	73.12	69.23
CDY27044	Canola	mitochondrion	72.5	68.64
VIT_16s0050g01490.t01	Wine grape	mitochondrion	72.5	68.64
CDY51827	Canola	mitochondrion	72.5	68.24
Bra022613.1-P	Field mustard	mitochondrion	71.88	68.05
CDX96158	Canola	mitochondrion	68.75	67.48
KRH38334	Soybean	mitochondrion	70.0	67.47
CDY49161	Canola	mitochondrion	51.25	65.6
Solyc03g007660.2.1	Tomato	plastid	71.25	65.52
PGSC0003DMT400074367	Potato	mitochondrion	68.75	62.86
Solyc06g036350.2.1	Tomato	nucleus	68.75	62.86
AT4G28005.1	Thale cress	mitochondrion	39.38	54.78

Protein Annotations

EnsemblPlants:TraesCS4D01G182200.1	EnsemblPlantsGene:TraesCS4D01G182200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	InterPro:ETC_CI_29_9
PANTHER:PTHR12653	PFAM:PF04716	SEG:seg	MapMan:2.4.1.4.1.2	:	:

Description

No Description!

Coordinates

chr4D:-:318490025..318492055

Molecular Weight (calculated)

18197.7 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.429

Length

160 amino acids

Sequence
(BLAST)

001: MFLRRILSGG GGLAALRSAR AVKETTGIVG LDVVPEARNV LIGLYTRTLK EIEAVPKDEG YRKAVESFTR HRLQICQEEE DWKRIEDRLG CGQVEELIEE
101: AEDELKLIGK MIEWDPWGVP DDYECEVIED DAPIPKHVPQ HRPVALPEEF FKTLDAIKSE

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.