Factsheet for TraesCS4B01G180700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	91.33	98.75
TraesCS4A01G123600.1	Wheat	mitochondrion	97.69	97.69
HORVU4Hr1G052890.1	Barley	mitochondrion	60.12	95.41
EER94961	Sorghum	mitochondrion	92.49	92.49
Os03t0313000-01	Rice	mitochondrion, plastid	91.91	91.91
Zm00001d028918_P001	Maize	mitochondrion	90.75	90.75
HORVU4Hr1G052900.7	Barley	mitochondrion	98.27	84.58
GSMUA_Achr11P...	Banana	mitochondrion	75.14	74.71
CDY56161	Canola	mitochondrion	69.36	70.59
Bra029106.1-P	Field mustard	mitochondrion	69.36	70.59
Bra003109.1-P	Field mustard	mitochondrion	68.79	70.41
AT5G52840.1	Thale cress	mitochondrion	68.79	70.41
CDY50398	Canola	mitochondrion	68.21	69.82
CDY51827	Canola	mitochondrion	68.21	69.41
VIT_16s0050g01490.t01	Wine grape	mitochondrion	67.63	69.23
CDY27044	Canola	mitochondrion	67.05	68.64
CDX96158	Canola	mitochondrion	64.16	68.1
KRH38334	Soybean	mitochondrion	65.32	68.07
Bra022613.1-P	Field mustard	mitochondrion	66.47	68.05
CDY49161	Canola	mitochondrion	47.4	65.6
Solyc03g007660.2.1	Tomato	plastid	65.32	64.94
PGSC0003DMT400074367	Potato	mitochondrion	63.01	62.29
Solyc06g036350.2.1	Tomato	nucleus	63.01	62.29
AT4G28005.1	Thale cress	mitochondrion	37.57	56.52

Protein Annotations

EnsemblPlants:TraesCS4B01G180700.1	EnsemblPlantsGene:TraesCS4B01G180700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	InterPro:ETC_CI_29_9
PANTHER:PTHR12653	PFAM:PF04716	SEG:seg	MapMan:2.4.1.4.1.2	:	:

Description

No Description!

Coordinates

chr4B:-:395731853..395734451

Molecular Weight (calculated)

19519.3 Da

IEP (calculated)

4.497

GRAVY (calculated)

-0.477

Length

173 amino acids

Sequence
(BLAST)

001: MFLRRILSGG GGLAALRSAR AVKETTGIVG LDVVPEARNV LIGLYTRTLK EIEAVPKDEG YRKAVESFTR HRLQICQEEE DWKRIEDRLG CGQVEELIEE
101: AEDELKLIGK MIEWDPWGVP DDYECEVIED DTPIPKHVPQ HRPVALPEEF FKTLDAIKSD PALQGDSPPQ VKS

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.