Factsheet for PGSC0003DMT400074367

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 7
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036350.2.1	Tomato	nucleus	97.14	97.14
VIT_16s0050g01490.t01	Wine grape	mitochondrion	76.0	78.7
KRH38334	Soybean	mitochondrion	70.86	74.7
CDY50398	Canola	mitochondrion	71.43	73.96
Bra029106.1-P	Field mustard	mitochondrion	71.43	73.53
CDY56161	Canola	mitochondrion	71.43	73.53
Bra003109.1-P	Field mustard	mitochondrion	70.86	73.37
CDY27044	Canola	mitochondrion	70.86	73.37
Bra022613.1-P	Field mustard	mitochondrion	70.29	72.78
CDX96158	Canola	mitochondrion	67.43	72.39
CDY51827	Canola	mitochondrion	70.29	72.35
AT5G52840.1	Thale cress	mitochondrion	69.71	72.19
CDY49161	Canola	mitochondrion	49.14	68.8
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	62.86	68.75
HORVU4Hr1G052890.1	Barley	mitochondrion	42.29	67.89
Zm00001d028918_P001	Maize	mitochondrion	62.86	63.58
Os03t0313000-01	Rice	mitochondrion, plastid	62.86	63.58
EER94961	Sorghum	mitochondrion	62.86	63.58
GSMUA_Achr11P...	Banana	mitochondrion	62.86	63.22
TraesCS4B01G180700.1	Wheat	golgi	62.29	63.01
TraesCS4A01G123600.1	Wheat	mitochondrion	60.57	61.27
AT4G28005.1	Thale cress	mitochondrion	38.86	59.13
HORVU4Hr1G052900.7	Barley	mitochondrion	62.29	54.23

Protein Annotations

EntrezGene:102579808	MapMan:2.4.1.4.1.2	InterPro:ETC_CI_29_9	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904
UniProt:M1CTL0	PFAM:PF04716	EnsemblPlantsGene:PGSC0003DMG400028905	PGSC:PGSC0003DMG400028905	EnsemblPlants:PGSC0003DMT400074367	PANTHER:PTHR12653
UniParc:UPI000294F89F	RefSeq:XP_006360191.1	:	:	:	:

Description

NADH dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400028905]

Coordinates

chr6:+:37947796..37954222

Molecular Weight (calculated)

19825.8 Da

IEP (calculated)

4.898

GRAVY (calculated)

-0.547

Length

175 amino acids

Sequence
(BLAST)

001: MFLRRIARPL MMMAKVKETT GIVGLEVVPN AREVLINLYR KTLEEIKAVP EDEGYRKAVE SFTRHRLNVC VEEHESEMIE KRLGCGQVEE LIEEAQDELK
101: LIGHMNEWKP WGIPDDYECE VIENDAPVPK HIPLHRPGPL PEEFYNTMGA VTSGKLDAGS KKDEPAISSG NSQSK

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.