CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49161	Canola	mitochondrion	72.78	98.4
Bra003109.1-P	Field mustard	mitochondrion	98.22	98.22
CDY51827	Canola	mitochondrion	95.86	95.29
CDY56161	Canola	mitochondrion	95.86	95.29
CDY27044	Canola	mitochondrion	94.08	94.08
CDX96158	Canola	mitochondrion	89.94	93.25
AT5G52840.1	Thale cress	mitochondrion	91.72	91.72
KRH38334	Soybean	mitochondrion	76.33	77.71
VIT_16s0050g01490.t01	Wine grape	mitochondrion	76.92	76.92
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	69.82	73.75
Solyc03g007660.2.1	Tomato	plastid	75.74	73.56
AT4G28005.1	Thale cress	mitochondrion	49.7	73.04
Solyc06g036350.2.1	Tomato	nucleus	75.15	72.57
PGSC0003DMT400074367	Potato	mitochondrion	73.96	71.43
GSMUA_Achr11P...	Banana	mitochondrion	71.6	69.54
HORVU4Hr1G052890.1	Barley	mitochondrion	44.38	68.81
TraesCS4A01G123600.1	Wheat	mitochondrion	69.82	68.21
TraesCS4B01G180700.1	Wheat	golgi	69.82	68.21
EER94961	Sorghum	mitochondrion	67.46	65.9
Os03t0313000-01	Rice	mitochondrion, plastid	67.46	65.9
Zm00001d028918_P001	Maize	mitochondrion	66.86	65.32
HORVU4Hr1G052900.7	Barley	mitochondrion	69.82	58.71

Protein Annotations

MapMan:2.4.1.4.1.2	GO:A0A078IMZ6	UniProt:A0A078IMZ6	EnsemblPlants:CDY50398	ProteinID:CDY50398	ProteinID:CDY50398.1
InterPro:ETC_CI_29_9	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	EnsemblPlantsGene:GSBRNA2T00096622001	PFAM:PF04716
PANTHER:PTHR12653	UniParc:UPI0004EE175B	:	:	:	:

Description

BnaC09g28890DBnaC09g28890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMZ6]

Coordinates

chrLK032906:+:45610..46658

Molecular Weight (calculated)

19125.8 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.454

Length

169 amino acids

Sequence
(BLAST)

001: MFLRSIGRPL LAKVKQTTGI VGLDVVSNAR AVLIDLYTKT LKEIQAVPED EGYRKAVESF TRHRLNVCKE EEDWEAIEKR LGCGQVEELI EEAQDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE DFYRTLEGLI SESKTKIPAA SSTDPLLKE

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.