Factsheet for Solyc03g007660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 7
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
endoplasmic reticulum: 29145071

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036350.2.1	Tomato	nucleus	91.95	91.43
VIT_16s0050g01490.t01	Wine grape	mitochondrion	79.89	82.25
KRH38334	Soybean	mitochondrion	72.99	76.51
Bra029106.1-P	Field mustard	mitochondrion	74.14	75.88
CDY50398	Canola	mitochondrion	73.56	75.74
CDY56161	Canola	mitochondrion	73.56	75.29
Bra003109.1-P	Field mustard	mitochondrion	72.99	75.15
CDY27044	Canola	mitochondrion	72.99	75.15
CDX96158	Canola	mitochondrion	70.11	74.85
CDY51827	Canola	mitochondrion	72.99	74.71
Bra022613.1-P	Field mustard	mitochondrion	72.41	74.56
AT5G52840.1	Thale cress	mitochondrion	72.41	74.56
CDY49161	Canola	mitochondrion	51.72	72.0
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	65.52	71.25
HORVU4Hr1G052890.1	Barley	mitochondrion	44.25	70.64
GSMUA_Achr11P...	Banana	mitochondrion	66.09	66.09
TraesCS4B01G180700.1	Wheat	golgi	64.94	65.32
Zm00001d028918_P001	Maize	mitochondrion	64.37	64.74
Os03t0313000-01	Rice	mitochondrion, plastid	64.37	64.74
EER94961	Sorghum	mitochondrion	64.37	64.74
TraesCS4A01G123600.1	Wheat	mitochondrion	63.22	63.58
AT4G28005.1	Thale cress	mitochondrion	39.66	60.0
HORVU4Hr1G052900.7	Barley	mitochondrion	64.94	56.22

Protein Annotations

EnsemblPlants:Solyc03g007660.2.1	EnsemblPlantsGene:Solyc03g007660.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	InterPro:ETC_CI_29_9
PANTHER:PTHR12653	PFAM:PF04716	UniParc:UPI000276815D	UniProt:K4BEI8	MapMan:2.4.1.4.1.2	:

Description

No Description!

Coordinates

chr3:+:2190944..2196447

Molecular Weight (calculated)

19743.6 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.558

Length

174 amino acids

Sequence
(BLAST)

001: MFLRRIARPL VMMAKVKETT GIVGLDVVPN AREVLINLYR KTLEEIKAVP EDEGYRKAVE SFTRHRLSVC QEEADSEMIE KRLGCGQVEE LIEEAQDELK
101: LIGHMNEWKP WGIPDDYECE VIENDAPVPK HVPLHRPGPL PEEFYNTLES VTSGKLETSK KDEPAIASGE SQSK

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.