Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 1
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49161 | Canola | mitochondrion | 70.43 | 64.8 |
| CDX96158 | Canola | mitochondrion | 71.3 | 50.31 |
| CDY50398 | Canola | mitochondrion | 73.04 | 49.7 |
| CDY56161 | Canola | mitochondrion | 73.04 | 49.41 |
| Bra029106.1-P | Field mustard | mitochondrion | 73.04 | 49.41 |
| Bra003109.1-P | Field mustard | mitochondrion | 72.17 | 49.11 |
| AT5G52840.1 | Thale cress | mitochondrion | 72.17 | 49.11 |
| CDY51827 | Canola | mitochondrion | 71.3 | 48.24 |
| CDY27044 | Canola | mitochondrion | 70.43 | 47.93 |
| Bra022613.1-P | Field mustard | mitochondrion | 69.57 | 47.34 |
| VIT_16s0050g01490.t01 | Wine grape | mitochondrion | 61.74 | 42.01 |
| Solyc06g036350.2.1 | Tomato | nucleus | 60.87 | 40.0 |
| Solyc03g007660.2.1 | Tomato | plastid | 60.0 | 39.66 |
| TraesCS4D01G182200.1 | Wheat | mitochondrion, plastid | 54.78 | 39.38 |
| PGSC0003DMT400074367 | Potato | mitochondrion | 59.13 | 38.86 |
| KRH38334 | Soybean | mitochondrion | 55.65 | 38.55 |
| GSMUA_Achr11P... | Banana | mitochondrion | 57.39 | 37.93 |
| TraesCS4B01G180700.1 | Wheat | golgi | 56.52 | 37.57 |
| TraesCS4A01G123600.1 | Wheat | mitochondrion | 55.65 | 36.99 |
| Zm00001d028918_P001 | Maize | mitochondrion | 53.91 | 35.84 |
| Os03t0313000-01 | Rice | mitochondrion, plastid | 53.91 | 35.84 |
| EER94961 | Sorghum | mitochondrion | 53.91 | 35.84 |
| HORVU4Hr1G052890.1 | Barley | mitochondrion | 32.17 | 33.95 |
| HORVU4Hr1G052900.7 | Barley | mitochondrion | 56.52 | 32.34 |
Protein Annotations
| ArrayExpress:AT4G28005 | EnsemblPlants:AT4G28005.1 | EnsemblPlantsGene:AT4G28005 | EntrezGene:828914 | ProteinID:AEE85419.1 | RefSeq:AT4G28005 |
| RefSeq:AT4G28005-TAIR-G | RefSeq:NP_680745.1 | TAIR:AT4G28005 | TAIR:AT4G28005.1 | UniParc:UPI0000162B37 | UniProt:F4JKF9 |
| MapMan:2.4.1.4.1.2 | : | : | : | : | : |
Description
BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1); Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 ( /.../: NCBI BLink). [Source:TAIR;Acc:AT4G28005]
Coordinates
chr4:-:13929655..13930191
Molecular Weight (calculated)
12778.4 Da
IEP (calculated)
5.226
GRAVY (calculated)
-0.325
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MFQRVIGRPL LAKVKQTTGI VEVCPEEEDW GVIEKRLACG KVEELIEEAS DELTLVGKMI GSLHPNLILA PIPKHVPHHR PGPLPEEFYR TLQAVNSESK
101: TEITATSSSD PQLKE
101: TEITATSSSD PQLKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.