Factsheet for Solyc06g036350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 7
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074367	Potato	mitochondrion	97.14	97.14
Solyc03g007660.2.1	Tomato	plastid	91.43	91.95
VIT_16s0050g01490.t01	Wine grape	mitochondrion	76.57	79.29
KRH38334	Soybean	mitochondrion	72.0	75.9
CDY50398	Canola	mitochondrion	72.57	75.15
CDY56161	Canola	mitochondrion	72.57	74.71
Bra029106.1-P	Field mustard	mitochondrion	72.57	74.71
CDY27044	Canola	mitochondrion	72.0	74.56
Bra003109.1-P	Field mustard	mitochondrion	72.0	74.56
CDX96158	Canola	mitochondrion	69.14	74.23
Bra022613.1-P	Field mustard	mitochondrion	71.43	73.96
CDY51827	Canola	mitochondrion	71.43	73.53
AT5G52840.1	Thale cress	mitochondrion	70.86	73.37
CDY49161	Canola	mitochondrion	50.86	71.2
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	62.86	68.75
HORVU4Hr1G052890.1	Barley	mitochondrion	41.71	66.97
GSMUA_Achr11P...	Banana	mitochondrion	63.43	63.79
Os03t0313000-01	Rice	mitochondrion, plastid	62.86	63.58
EER94961	Sorghum	mitochondrion	62.86	63.58
Zm00001d028918_P001	Maize	mitochondrion	62.86	63.58
TraesCS4B01G180700.1	Wheat	golgi	62.29	63.01
TraesCS4A01G123600.1	Wheat	mitochondrion	60.57	61.27
AT4G28005.1	Thale cress	mitochondrion	40.0	60.87
HORVU4Hr1G052900.7	Barley	mitochondrion	62.29	54.23

Protein Annotations

EnsemblPlants:Solyc06g036350.2.1	EnsemblPlantsGene:Solyc06g036350.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	InterPro:ETC_CI_29_9
PANTHER:PTHR12653	PFAM:PF04716	UniParc:UPI0002766124	UniProt:K4C502	MapMan:2.4.1.4.1.2	:

Description

No Description!

Coordinates

chr6:+:25916880..25922222

Molecular Weight (calculated)

19956.9 Da

IEP (calculated)

4.662

GRAVY (calculated)

-0.597

Length

175 amino acids

Sequence
(BLAST)

001: MFLRRIARPL MMMAKVKETT GIVGLEVVPN AREVLINLYR KTLEEIKEVP EDEGYRKAVE SFTRHRLNVC VEEHESEMIE KRLGCGQVEE LIEEAQDELK
101: LIGHMNEWKP WGIPDDYECE VIENDAPVPK HVPLHRPGPL PEEFYNTMEA VTSGKLDAGS KKDEPAISSG DTQSK

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.