Factsheet for Os03t0313000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 17189339
mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
nucleus: 26035336
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94961	Sorghum	mitochondrion	93.64	93.64
Zm00001d028918_P001	Maize	mitochondrion	92.49	92.49
TraesCS4B01G180700.1	Wheat	golgi	91.91	91.91
TraesCS4D01G182200.1	Wheat	mitochondrion, plastid	84.39	91.25
TraesCS4A01G123600.1	Wheat	mitochondrion	90.17	90.17
HORVU4Hr1G052890.1	Barley	mitochondrion	56.07	88.99
HORVU4Hr1G052900.7	Barley	mitochondrion	91.91	79.1
GSMUA_Achr11P...	Banana	mitochondrion	76.88	76.44
CDY56161	Canola	mitochondrion	68.21	69.41
VIT_16s0050g01490.t01	Wine grape	mitochondrion	67.05	68.64
CDY51827	Canola	mitochondrion	67.05	68.24
Bra029106.1-P	Field mustard	mitochondrion	67.05	68.24
Bra003109.1-P	Field mustard	mitochondrion	66.47	68.05
CDY50398	Canola	mitochondrion	65.9	67.46
CDY27044	Canola	mitochondrion	65.9	67.46
AT5G52840.1	Thale cress	mitochondrion	65.9	67.46
CDX96158	Canola	mitochondrion	63.01	66.87
KRH38334	Soybean	mitochondrion	64.16	66.87
Bra022613.1-P	Field mustard	mitochondrion	65.32	66.86
Solyc03g007660.2.1	Tomato	plastid	64.74	64.37
PGSC0003DMT400074367	Potato	mitochondrion	63.58	62.86
Solyc06g036350.2.1	Tomato	nucleus	63.58	62.86
CDY49161	Canola	mitochondrion	45.09	62.4
AT4G28005.1	Thale cress	mitochondrion	35.84	53.91

Protein Annotations

MapMan:2.4.1.4.1.2	EntrezGene:4332639	ProteinID:ABF95596.1	ProteinID:BAF11840.1	ProteinID:BAS83880.1	InterPro:ETC_CI_29_9
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016651	GO:GO:0022904	EnsemblPlantsGene:Os03g0313000	EnsemblPlants:Os03t0313000-01	PFAM:PF04716
PANTHER:PTHR12653	UniProt:Q10MD5	UniParc:UPI0000DB41FE	RefSeq:XP_015627795.1	SEG:seg	:

Description

Similar to NADH-ubiquinone oxidoreductase (Fragment). (Os03t0313000-01)

Coordinates

chr3:+:11181026..11183927

Molecular Weight (calculated)

19514.3 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.420

Length

173 amino acids

Sequence
(BLAST)

001: MFLRRILSGG GGVAALRAAR AVKETTGIVG LEVVPNAREV LVGLYTRTLK EIEAVPKDEG YRKAVESFTR HRLQICQEED DWKRIEDRIG CGQVEELIEE
101: AQDELKLIAK MIEWDPWGVP DDYECEVIED DTLIPKHVPQ HRPVALPEEF FKTLDAVKSD PALQGESPPQ VKP

Best Arabidopsis Sequence Match ( AT5G52840.1 )
(BLAST)

001: MFLRAIGRPL LAKVKQTTGI VGLDVVPNAR AVLIDLYSKT LKEIQAVPED EGYRKAVESF TRQRLNVCKE EEDWEMIEKR LGCGQVEELI EEARDELTLI
101: GKMIEWDPWG VPDDYECEVI ENDAPIPKHV PQHRPGPLPE QFYKTLEGLI AESKTEIPAA TPSDPQLKE

Arabidopsis Description

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.