CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18012	Canola	mitochondrion	86.45	86.45
Bra000873.1-P	Field mustard	mitochondrion	87.65	86.27
CDX90931	Canola	mitochondrion	87.65	86.27
AT4G02580.1	Thale cress	mitochondrion	87.25	85.88
VIT_07s0141g00240.t01	Wine grape	mitochondrion	86.45	85.43
Solyc09g065830.2.1	Tomato	plastid	82.47	81.18
PGSC0003DMT400049678	Potato	extracellular	82.07	80.78
TraesCS1D01G329000.1	Wheat	peroxisome	67.73	80.57
GSMUA_Achr4P22540_001	Banana	mitochondrion	81.27	77.57
GSMUA_Achr7P07640_001	Banana	mitochondrion	80.08	77.01
KRH23599	Soybean	plastid	88.45	74.25
Os05t0509200-01	Rice	mitochondrion	77.69	71.17
TraesCS1A01G326900.1	Wheat	mitochondrion	76.89	69.18
KXG22309	Sorghum	mitochondrion	76.89	68.68
TraesCS1B01G340300.2	Wheat	mitochondrion	77.29	68.55
CDX91292	Canola	mitochondrion, plastid	68.13	68.13
HORVU1Hr1G077910.2	Barley	plastid	76.89	63.07
Zm00001d038658_P001	Maize	mitochondrion	76.49	59.26

Protein Annotations

Gene3D:1.10.10.1590	EntrezGene:100786050	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	EMBL:ACUP02009107	EMBL:BT097427
UniProt:C6TIE6	EnsemblPlantsGene:GLYMA_15G006400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0006091
GO:GO:0006120	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
EnsemblPlants:KRH09710	ProteinID:KRH09710	ProteinID:KRH09710.1	InterPro:NuoE-like	PFAM:PF01257	PIRSF:PIRSF000216
ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	SUPFAM:SSF52833	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf
UniParc:UPI0001B16B09	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:546560..550831

Molecular Weight (calculated)

28002.6 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.416

Length

251 amino acids

Sequence
(BLAST)

001: MLARLAASRF NEIRQIFRQP SRAFSTALNY HLDTPDNNPK LPWEFTEANQ AKVKEILSHY PSNYKQSATI PLLDLAQQQH GGWLPVSAMD AVAKIVEVPP
101: IRVYEVATFY SMFNRAKVGK YHLLVCGTTP CMIRGSRGIE EALLKHLGVK RNEVTPDGLF SVGEMECMGC CVNAPMITVA DYSNGSEGYT YNYFEDVTPE
201: KVVEIVEKLR KGEKPPHGTQ NPRRIKSGPE GGNTTLLSEP KPPPCRDLDS C

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.