CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90931	Canola	mitochondrion	78.09	76.86
CDY18012	Canola	mitochondrion	76.49	76.49
KRH09710	Soybean	mitochondrion	68.13	68.13
VIT_07s0141g00240.t01	Wine grape	mitochondrion	67.33	66.54
Solyc09g065830.2.1	Tomato	plastid	65.34	64.31
PGSC0003DMT400049678	Potato	extracellular	64.94	63.92
GSMUA_Achr7P07640_001	Banana	mitochondrion	65.34	62.84
GSMUA_Achr4P22540_001	Banana	mitochondrion	65.74	62.74
TraesCS1D01G329000.1	Wheat	peroxisome	52.59	62.56
Os05t0509200-01	Rice	mitochondrion	60.56	55.47
KXG22309	Sorghum	mitochondrion	61.35	54.8
TraesCS1A01G326900.1	Wheat	mitochondrion	58.96	53.05
TraesCS1B01G340300.2	Wheat	mitochondrion	59.76	53.0
KRH23599	Soybean	plastid	62.15	52.17
HORVU1Hr1G077910.2	Barley	plastid	59.36	48.69
Zm00001d038658_P001	Maize	mitochondrion	61.35	47.53

Protein Annotations

EnsemblPlants:CDX91292	EnsemblPlantsGene:GSBRNA2T00152539001	Gene3D:3.40.30.10	GO:A0A078DQU9	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NuoE-like	InterPro:Thioredoxin-like_sf
PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	PFAM:PF01257	PIRSF:PIRSF000216	ProteinID:CDX91292	ProteinID:CDX91292.1
ScanProsite:PS01099	SEG:seg	SUPFAM:SSF52833	UniParc:UPI0004EF2809	MapMan:35.1	:

Description

BnaC02g27030D

Coordinates

chrLK031866:+:1247478..1249942

Molecular Weight (calculated)

28483.3 Da

IEP (calculated)

8.153

GRAVY (calculated)

-0.414

Length

251 amino acids

Sequence
(BLAST)

001: MFCKHISNLF FSYLRPSKHI SNNTLKILKN AKRLLEIRQV FRQPPSQSSH SLSTSLNYHM DSLDNKLDLP WEFSEANKSK EILSYYPSNY KQSAVIPLLD
101: LAQHQHGGWL HVSAMNVVGK YHLLVCGTTP CMICGSRDIE SVLLDHLGVK RGEVTKDGLF SVREMECMGC CVNAPMITVE DYSNGSQGYT YNYFVYVRPE
201: KVVEIVEKLR KGEKPPHETQ DPKRIKCGPE GGNTTLLGEP KPLQFRDLDA C

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.