Factsheet for Zm00001d038658_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 14690504
extracellular: 20408568
mitochondrion: 22607058
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 22607058 doi

D Dahal, BP Mooney, KJ Newton

Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 14690504

F Hochholdinger, L Guo, PS Schnable

Department of Agronomy, Iowa State University, Ames, IA 50011, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22309	Sorghum	mitochondrion	82.72	95.37
TraesCS1D01G329000.1	Wheat	peroxisome	59.26	91.0
Os05t0509200-01	Rice	mitochondrion	76.23	90.15
TraesCS1A01G326900.1	Wheat	mitochondrion	73.77	85.66
TraesCS1B01G340300.2	Wheat	mitochondrion	72.22	82.69
HORVU1Hr1G077910.2	Barley	plastid	77.47	82.03
VIT_07s0141g00240.t01	Wine grape	mitochondrion	62.35	79.53
CDY18012	Canola	mitochondrion	60.19	77.69
CDX90931	Canola	mitochondrion	60.49	76.86
GSMUA_Achr4P22540_001	Banana	mitochondrion	62.35	76.81
GSMUA_Achr7P07640_001	Banana	mitochondrion	61.73	76.63
KRH09710	Soybean	mitochondrion	59.26	76.49
Bra000873.1-P	Field mustard	mitochondrion	59.88	76.08
PGSC0003DMT400049678	Potato	extracellular	59.88	76.08
Solyc09g065830.2.1	Tomato	plastid	59.57	75.69
AT4G02580.1	Thale cress	mitochondrion	59.26	75.29
CDX91292	Canola	mitochondrion, plastid	47.53	61.35
KRH23599	Soybean	plastid	54.94	59.53

Protein Annotations

Gene3D:1.10.10.1590	EntrezGene:100272681	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	ProteinID:AQK87129.1	UniProt:B4FPX5
EMBL:BT039163	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:NuoE-like	PFAM:PF01257	ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9
SUPFAM:SSF52833	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI00017B7693	EnsemblPlantsGene:Zm00001d038658	EnsemblPlants:Zm00001d038658_P001
EnsemblPlants:Zm00001d038658_T001	SEG:seg	:	:	:	:

Description

NADH dehydrogenase [ubiquinone] flavoprotein 2 mitochondrial

Coordinates

chr6:+:161945970..161951107

Molecular Weight (calculated)

35202.1 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.375

Length

324 amino acids

Sequence
(BLAST)

001: MRRKRKTGRL FYFYLASQAS QGGHTPIPPP SPAPSSPTAG HATMLPPAAR LAARRLLGLA SASASEAAGR RVASSPIASA GYSAAASRGS VSSTRPFSTA
101: LNYHLDSPEN KPDMKWEFSQ ANMKKVNEIL SHYPSNYKQS GIIPLLDLAQ QQHGGWVPVA AMDAIAKIVE VAPIRVYEVA TFYTMFNRTK VGKYHLLVCG
201: TTPCMIRGSR EIEETLLEHL GVKRNEVTSD GLFSVGEMEC MGCCVNAPMI AVADYSKGSE GYTYNYYEDL TPKRVVEIVE MLRRGETPPR GTQHPERKNC
301: GPAGGNTTLH GEPKPPPCRD LDAC

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.