Factsheet for Bra000873.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90931	Canola	mitochondrion	98.43	98.43
CDY18012	Canola	mitochondrion	96.08	97.61
AT4G02580.1	Thale cress	mitochondrion	96.86	96.86
KRH09710	Soybean	mitochondrion	86.27	87.65
VIT_07s0141g00240.t01	Wine grape	mitochondrion	86.27	86.61
PGSC0003DMT400049678	Potato	extracellular	81.96	81.96
Solyc09g065830.2.1	Tomato	plastid	81.96	81.96
GSMUA_Achr4P22540_001	Banana	mitochondrion	83.14	80.61
GSMUA_Achr7P07640_001	Banana	mitochondrion	81.96	80.08
TraesCS1D01G329000.1	Wheat	peroxisome	65.1	78.67
Os05t0509200-01	Rice	mitochondrion	76.08	70.8
KXG22309	Sorghum	mitochondrion	77.25	70.11
TraesCS1A01G326900.1	Wheat	mitochondrion	74.9	68.46
TraesCS1B01G340300.2	Wheat	mitochondrion	75.69	68.2
KRH23599	Soybean	plastid	78.43	66.89
HORVU1Hr1G077910.2	Barley	plastid	75.29	62.75
Zm00001d038658_P001	Maize	mitochondrion	76.08	59.88

Protein Annotations

Gene3D:1.10.10.1590	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra000873	EnsemblPlants:Bra000873.1	EnsemblPlants:Bra000873.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	UniProt:M4C9J4	InterPro:NuoE-like	PFAM:PF01257	PIRSF:PIRSF000216
ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	SUPFAM:SSF52833	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf
UniParc:UPI000254059F	:	:	:	:	:

Description

AT4G02580 (E=1e-144) | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative

Coordinates

chrA03:-:13628622..13630950

Molecular Weight (calculated)

28463.3 Da

IEP (calculated)

8.258

GRAVY (calculated)

-0.388

Length

255 amino acids

Sequence
(BLAST)

001: MLARLAAKRL LEIRQAFRQP PTQAYRSFST ALNYHLDSPD NKPDLPWEFS EANKSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQHGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.