Factsheet for Solyc09g065830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049678	Potato	extracellular	98.43	98.43
VIT_07s0141g00240.t01	Wine grape	mitochondrion	82.75	83.07
CDY18012	Canola	mitochondrion	81.57	82.87
KRH09710	Soybean	mitochondrion	81.18	82.47
CDX90931	Canola	mitochondrion	82.35	82.35
Bra000873.1-P	Field mustard	mitochondrion	81.96	81.96
AT4G02580.1	Thale cress	mitochondrion	81.96	81.96
TraesCS1D01G329000.1	Wheat	peroxisome	66.27	80.09
GSMUA_Achr7P07640_001	Banana	mitochondrion	79.61	77.78
GSMUA_Achr4P22540_001	Banana	mitochondrion	79.22	76.81
Os05t0509200-01	Rice	mitochondrion	76.86	71.53
TraesCS1A01G326900.1	Wheat	mitochondrion	75.29	68.82
KXG22309	Sorghum	mitochondrion	75.69	68.68
TraesCS1B01G340300.2	Wheat	mitochondrion	74.9	67.49
CDX91292	Canola	mitochondrion, plastid	64.31	65.34
KRH23599	Soybean	plastid	73.73	62.88
HORVU1Hr1G077910.2	Barley	plastid	75.29	62.75
Zm00001d038658_P001	Maize	mitochondrion	75.69	59.57

Protein Annotations

Gene3D:1.10.10.1590	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0006091	GO:GO:0006120	GO:GO:0006139	GO:GO:0006950	GO:GO:0006979	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	UniProt:K4CUK9	InterPro:NuoE-like
PFAM:PF01257	PIRSF:PIRSF000216	ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc09g065830.2	EnsemblPlants:Solyc09g065830.2.1	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI000276C938	:

Description

No Description!

Coordinates

chr9:-:64101025..64109232

Molecular Weight (calculated)

28283.9 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.417

Length

255 amino acids

Sequence
(BLAST)

001: MFGRLAAQRL NEIRTSIRRT TQASRSFSTA LNYHIDTPDN KTDLPWEFNN ANKEKVKEIL SFYPSNYKQS AVIPLLDLAQ QQNGGWLPVS AMNAVAKVVE
101: VAPIRVYEVA TFYTMFNRTK VGKYHLLVCG TTPCMIRGSR GIEEAILKHL GVKRNEVTKD GLFSVGEMEC MGCCVNAPMM TVADYSNGSE GYAYNYYEDL
201: TPKKAVEIVE AFRKGEKPPR GTQNPGRINC GPEGGNTTLL GEPKAPPCRD LDAAE

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.