Factsheet for PGSC0003DMT400049678

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065830.2.1	Tomato	plastid	98.43	98.43
VIT_07s0141g00240.t01	Wine grape	mitochondrion	82.75	83.07
CDY18012	Canola	mitochondrion	81.57	82.87
CDX90931	Canola	mitochondrion	82.35	82.35
KRH09710	Soybean	mitochondrion	80.78	82.07
Bra000873.1-P	Field mustard	mitochondrion	81.96	81.96
AT4G02580.1	Thale cress	mitochondrion	81.57	81.57
TraesCS1D01G329000.1	Wheat	peroxisome	65.88	79.62
GSMUA_Achr7P07640_001	Banana	mitochondrion	78.82	77.01
GSMUA_Achr4P22540_001	Banana	mitochondrion	79.22	76.81
Os05t0509200-01	Rice	mitochondrion	76.47	71.17
TraesCS1A01G326900.1	Wheat	mitochondrion	75.69	69.18
KXG22309	Sorghum	mitochondrion	76.08	69.04
TraesCS1B01G340300.2	Wheat	mitochondrion	75.29	67.84
CDX91292	Canola	mitochondrion, plastid	63.92	64.94
HORVU1Hr1G077910.2	Barley	plastid	75.69	63.07
KRH23599	Soybean	plastid	73.73	62.88
Zm00001d038658_P001	Maize	mitochondrion	76.08	59.88

Protein Annotations

Gene3D:1.10.10.1590	EntrezGene:102606431	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005747	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
UniProt:M1BP60	InterPro:NuoE-like	PFAM:PF01257	EnsemblPlantsGene:PGSC0003DMG400019303	PGSC:PGSC0003DMG400019303	EnsemblPlants:PGSC0003DMT400049678
PIRSF:PIRSF000216	ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	SUPFAM:SSF52833	TIGRFAMs:TIGR01958
InterPro:Thioredoxin-like_sf	UniParc:UPI000295A85D	RefSeq:XP_006349738.1	:	:	:

Description

NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400019303]

Coordinates

chr9:-:48711881..48721794

Molecular Weight (calculated)

28277.9 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.402

Length

255 amino acids

Sequence
(BLAST)

001: MFGRLAAQRL NEIRTAIRRT TQASRSFSTA LNYHIDTPDN KPDLPWEFNN ANKEKVKEIL SFYPSNYKQS AVIPLLDLAQ QQNGGWLPVS AMNAVAKVVE
101: VAPIRVYEVV TFYTMFNRTK VGKYHLLVCG TTPCMIRGSR GIEEAILKHL GVKRNEVTKD GLFSVGEMEC MGCCVNAPMM TVADYSNGSE GYAYNYYEDL
201: TPKKAVEIVE AFRKGEKPPR GTQNPGRVNC GPEGGNTTLL GEPKAPPCRD LDAAE

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.