CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90931	Canola	mitochondrion	98.8	97.25
Bra000873.1-P	Field mustard	mitochondrion	97.61	96.08
AT4G02580.1	Thale cress	mitochondrion	96.02	94.51
KRH09710	Soybean	mitochondrion	86.45	86.45
VIT_07s0141g00240.t01	Wine grape	mitochondrion	87.25	86.22
PGSC0003DMT400049678	Potato	extracellular	82.87	81.57
Solyc09g065830.2.1	Tomato	plastid	82.87	81.57
GSMUA_Achr7P07640_001	Banana	mitochondrion	82.87	79.69
GSMUA_Achr4P22540_001	Banana	mitochondrion	83.27	79.47
TraesCS1D01G329000.1	Wheat	peroxisome	65.34	77.73
CDX91292	Canola	mitochondrion, plastid	76.49	76.49
Os05t0509200-01	Rice	mitochondrion	77.69	71.17
KXG22309	Sorghum	mitochondrion	78.49	70.11
TraesCS1A01G326900.1	Wheat	mitochondrion	75.7	68.1
TraesCS1B01G340300.2	Wheat	mitochondrion	76.49	67.84
KRH23599	Soybean	plastid	78.49	65.89
HORVU1Hr1G077910.2	Barley	plastid	76.1	62.42
Zm00001d038658_P001	Maize	mitochondrion	77.69	60.19

Protein Annotations

Gene3D:1.10.10.1590	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	GO:A0A078FZ07	UniProt:A0A078FZ07	EnsemblPlants:CDY18012
ProteinID:CDY18012	ProteinID:CDY18012.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00002399001	InterPro:NuoE-like	PFAM:PF01257	PIRSF:PIRSF000216	ScanProsite:PS01099	PANTHER:PTHR10371
PANTHER:PTHR10371:SF9	SUPFAM:SSF52833	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EB9A02	:

Description

BnaC03g30840DBnaC03g30840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ07]

Coordinates

chrLK032080:-:515855..518148

Molecular Weight (calculated)

27805.5 Da

IEP (calculated)

7.712

GRAVY (calculated)

-0.338

Length

251 amino acids

Sequence
(BLAST)

001: MLARLAAKRL LEIRQAPSQA SRSFSTALNY HLDSPDNKPD LPWEFSEANK SKVKEILSYY PSNYKQSAVI PLLDLAQQQH GGWLPVSAMN AVAKVIEVAP
101: IRVYEVATFY SMFNRAKVGK YHLLVCGTTP CMICGSREIE SALLDHLGVK RGEVTKDGLF SVGEMECMGC CVNAPMITVA DYSNGSEGYT YNYFEDVTPE
201: KVVEIVEKLR KGEKPPHGTQ NPKRIKCGPE GGNKTLLGEP KPPQFRDLDA C

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.