Factsheet for GSMUA_Achr4P22540_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P07640_001	Banana	mitochondrion	84.41	85.06
VIT_07s0141g00240.t01	Wine grape	mitochondrion	81.75	84.65
CDX90931	Canola	mitochondrion	80.99	83.53
CDY18012	Canola	mitochondrion	79.47	83.27
Bra000873.1-P	Field mustard	mitochondrion	80.61	83.14
TraesCS1D01G329000.1	Wheat	peroxisome	65.78	81.99
AT4G02580.1	Thale cress	mitochondrion	79.47	81.96
KRH09710	Soybean	mitochondrion	77.57	81.27
Solyc09g065830.2.1	Tomato	plastid	76.81	79.22
PGSC0003DMT400049678	Potato	extracellular	76.81	79.22
Os05t0509200-01	Rice	mitochondrion	77.57	74.45
KXG22309	Sorghum	mitochondrion	78.33	73.31
TraesCS1A01G326900.1	Wheat	mitochondrion	76.81	72.4
TraesCS1B01G340300.2	Wheat	mitochondrion	77.19	71.73
HORVU1Hr1G077910.2	Barley	plastid	76.81	66.01
CDX91292	Canola	mitochondrion, plastid	62.74	65.74
Zm00001d038658_P001	Maize	mitochondrion	76.81	62.35
KRH23599	Soybean	plastid	69.58	61.2

Protein Annotations

Gene3D:1.10.10.1590	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G22540_001	EnsemblPlants:GSMUA_Achr4P22540_001	EnsemblPlants:GSMUA_Achr4T22540_001	UniProt:M0SR67	InterPro:NuoE-like
PFAM:PF01257	PIRSF:PIRSF000216	ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	SUPFAM:SSF52833
TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI00029656ED	SEG:seg	:	:

Description

NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr4G22540_001]

Coordinates

chr4:+:22811882..22819828

Molecular Weight (calculated)

29136.3 Da

IEP (calculated)

8.457

GRAVY (calculated)

-0.287

Length

263 amino acids

Sequence
(BLAST)

001: MFSPAARLAT KRLLEIRRAL RPSLALTSPA VAARSLSTAL NYHIDSPDNN PDKPWEFSEA NMKRVKEILS HYPSNYKQSA VIPLLDLAQQ QHGGWLPVSA
101: MNAVAKIMEV APIRVYEVAT FYSMFNRTKV GTYHLLVCGT TPCMIRGSRE IEDALLKHLG VKRNEVTKDG MFSVGEMECM GCCVNAPMIV VADYSNGSEG
201: YSYNYYEDVT PKRVVEIVEM LRKGEKLPAG TQNPDRIRGG PAGGNTTLLR EPKPPPCRDL DAC

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.