Factsheet for VIT_07s0141g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18012	Canola	mitochondrion	86.22	87.25
CDX90931	Canola	mitochondrion	87.4	87.06
KRH09710	Soybean	mitochondrion	85.43	86.45
Bra000873.1-P	Field mustard	mitochondrion	86.61	86.27
AT4G02580.1	Thale cress	mitochondrion	85.43	85.1
TraesCS1D01G329000.1	Wheat	peroxisome	70.08	84.36
PGSC0003DMT400049678	Potato	extracellular	83.07	82.75
Solyc09g065830.2.1	Tomato	plastid	83.07	82.75
GSMUA_Achr4P22540_001	Banana	mitochondrion	84.65	81.75
GSMUA_Achr7P07640_001	Banana	mitochondrion	83.86	81.61
Os05t0509200-01	Rice	mitochondrion	79.92	74.09
TraesCS1A01G326900.1	Wheat	mitochondrion	80.31	73.12
TraesCS1B01G340300.2	Wheat	mitochondrion	81.1	72.79
KXG22309	Sorghum	mitochondrion	80.31	72.6
CDX91292	Canola	mitochondrion, plastid	66.54	67.33
HORVU1Hr1G077910.2	Barley	plastid	80.31	66.67
KRH23599	Soybean	plastid	77.95	66.22
Zm00001d038658_P001	Maize	mitochondrion	79.53	62.35

Protein Annotations

Gene3D:1.10.10.1590	EntrezGene:100242595	wikigene:100242595	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	EMBL:AM434032
ProteinID:CAN67085	ProteinID:CAN67085.1	ProteinID:CBI17929	ProteinID:CBI17929.3	UniProt:D7SQJ8	EMBL:FN594965
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0006091	GO:GO:0006120	GO:GO:0006139
GO:GO:0006950	GO:GO:0006979	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	EntrezGene:LOC100242595	wikigene:LOC100242595	InterPro:NuoE-like	PFAM:PF01257	PIRSF:PIRSF000216
ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	SUPFAM:SSF52833	TIGR:TC63001	TIGR:TC63172
TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI00015CAAAC	ArrayExpress:VIT_07s0141g00240	EnsemblPlantsGene:VIT_07s0141g00240	EnsemblPlants:VIT_07s0141g00240.t01
unigene:Vvi.8444	RefSeq:XP_002281655	RefSeq:XP_002281655.1	:	:	:

Description

No Description!

Coordinates

chr7:-:146287..154292

Molecular Weight (calculated)

28421.1 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.424

Length

254 amino acids

Sequence
(BLAST)

001: MLARLATKRL LEVRQIFRQN HQTSRSFSTA LNYHLDSPDN NPNIPWEFND ANKGKVKEIL SHYPSNYKQS AVIPLLDLAQ QQHGGWLPVS AMDAVAKVVE
101: VAPIRVYEVA TFYSMFNRAK VGKYHLLVCG TTPCMIRGSR EIEDALLKHL GVKRNEVTKD GLFSVGEMEC MGCCVNAPMI TVADYSTGSE GYTYNYYEDV
201: TPKRVVEIVE MLRRGEKPPH GTQNPQRTRC GPEGGNTTLL GEPKAPPCRD LDAC

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.