Factsheet for Os05t0509200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G329000.1	Wheat	peroxisome	70.8	91.94
KXG22309	Sorghum	mitochondrion	89.42	87.19
TraesCS1A01G326900.1	Wheat	mitochondrion	86.13	84.59
TraesCS1B01G340300.2	Wheat	mitochondrion	85.77	83.04
VIT_07s0141g00240.t01	Wine grape	mitochondrion	74.09	79.92
GSMUA_Achr7P07640_001	Banana	mitochondrion	74.82	78.54
HORVU1Hr1G077910.2	Barley	plastid	87.23	78.1
CDY18012	Canola	mitochondrion	71.17	77.69
KRH09710	Soybean	mitochondrion	71.17	77.69
GSMUA_Achr4P22540_001	Banana	mitochondrion	74.45	77.57
CDX90931	Canola	mitochondrion	71.53	76.86
Solyc09g065830.2.1	Tomato	plastid	71.53	76.86
PGSC0003DMT400049678	Potato	extracellular	71.17	76.47
Zm00001d038658_P001	Maize	mitochondrion	90.15	76.23
Bra000873.1-P	Field mustard	mitochondrion	70.8	76.08
AT4G02580.1	Thale cress	mitochondrion	70.07	75.29
CDX91292	Canola	mitochondrion, plastid	55.47	60.56
KRH23599	Soybean	plastid	64.96	59.53

Protein Annotations

Gene3D:1.10.10.1590	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	EntrezGene:4339271	ProteinID:AAT44268.1	EMBL:AK061566
EMBL:AK099007	ProteinID:BAF17914.1	ProteinID:BAS94820.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747
GO:GO:0006091	GO:GO:0006120	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:NuoE-like	EnsemblPlantsGene:Os05g0509200	EnsemblPlants:Os05t0509200-01	PFAM:PF01257	PIRSF:PIRSF000216
ScanProsite:PS01099	PANTHER:PTHR10371	PANTHER:PTHR10371:SF9	UniProt:Q6L4W7	SUPFAM:SSF52833	TIGRFAMs:TIGR01958
InterPro:Thioredoxin-like_sf	UniParc:UPI00003A9274	RefSeq:XP_015637532.1	SEG:seg	:	:

Description

Thioredoxin fold domain containing protein. (Os05t0509200-01)

Coordinates

chr5:+:25214532..25217859

Molecular Weight (calculated)

30057.1 Da

IEP (calculated)

7.414

GRAVY (calculated)

-0.308

Length

274 amino acids

Sequence
(BLAST)

001: MLPPAARLAA RRLLGLATSS ASESAAARRL SRSPISYAAA GCSSRLFSTA LNYHLDSPEN NPDMPWEFTE ANMKKVNEIL SHYPSNYKQS GIIPMLDLAQ
101: QQHGGWVPVA AMNAIAKIVE VAPIRVYEVA TFYTMFNRTK VGKYHLLVCG TTPCMIRGSR EIEEALLEHL GVKRNEVTSD GLFSVGEMEC MGCCVNAPMI
201: AVADYSKGSE GYTYNYYEDL TPKRVVEIVE MLKRGETPPR GTQHPERKNC GPAGGNTTLH GEPKPPPCRD LDAC

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.