CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02050.1	KRH10294	AT3G46090.1	17259181
AT2G02050.1	KRH23029	AT3G46090.1	17259181
AT2G02050.1	KRH24840	AT3G46090.1	17259181
AT2G02050.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008490.1.1	Tomato	cytosol	77.55	76.0
VIT_01s0137g00010.t01	Wine grape	cytosol	75.51	74.0
KRH16100	Soybean	cytosol	58.16	73.08
CDY03083	Canola	cytosol	74.49	71.57
CDY17445	Canola	cytosol	74.49	71.57
Bra026619.1-P	Field mustard	cytosol	65.31	71.11
Bra024837.1-P	Field mustard	cytosol	73.47	70.59
CDY17618	Canola	cytosol	73.47	70.59
CDY09393	Canola	cytosol	65.31	68.82
AT2G02050.1	Thale cress	cytosol	69.39	66.02
EER92927	Sorghum	cytosol	72.45	65.74
Zm00001d027493_P001	Maize	mitochondrion	72.45	65.74
HORVU4Hr1G082570.1	Barley	mitochondrion	68.37	60.36
TraesCS4B01G323800.1	Wheat	cytosol	68.37	60.36
TraesCS4D01G320600.1	Wheat	mitochondrion	68.37	60.36
TraesCS5A01G496200.1	Wheat	mitochondrion	68.37	60.36
CDY15810	Canola	cytosol, nucleus, plastid	51.02	54.95
Bra017426.1-P	Field mustard	cytosol	72.45	51.82
Os03t0129900-01	Rice	mitochondrion	66.33	44.22
GSMUA_Achr4P29690_001	Banana	cytosol	36.73	30.25

Protein Annotations

EntrezGene:100306450	MapMan:2.4.1.4.2.3	EMBL:ACUP02012633	EMBL:BT090562	UniProt:C6SZG1	EnsemblPlantsGene:GLYMA_20G108500
GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114
EnsemblPlants:KRG90692	ProteinID:KRG90692	ProteinID:KRG90692.1	InterPro:NADH_UbQ_OxRdtase_B18_su	PFAM:PF05676	PFscan:PS51808
PANTHER:PTHR20900	UniParc:UPI0001B15031	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:35078913..35079592

Molecular Weight (calculated)

11572.1 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.752

Length

98 amino acids

Sequence
(BLAST)

1: MEVEGSSKKM IATQEEMVEA RVPLAYRDQC AHLLIPLNKC RQAEFYLPWK CQDQRHSYEK CQYELVMERM LQMQKIREHQ QNPNAKQPLI ALPKPANA

Best Arabidopsis Sequence Match ( AT2G02050.1 )
(BLAST)

001: MEVPGSSKKM IATQEEMSAA KIALGSRDMC AHLLIPLNKC RQAEFYLPWK CEDERHVYEK CEYELVMERM LAMKKIREEE ALAKQNKLQG NAAVPLIPKT
101: ANA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.