Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g075780.1.1 | |
| Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02050.1 | Solyc06g075780.1.1 | AT3G46090.1 | 17259181 |
| AT2G02050.1 | Solyc11g073060.1.1 | AT3G46090.1 | 17259181 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0137g00010.t01 | Wine grape | cytosol | 84.0 | 84.0 |
| CDY03083 | Canola | cytosol | 85.0 | 83.33 |
| CDY17445 | Canola | cytosol | 85.0 | 83.33 |
| Bra024837.1-P | Field mustard | cytosol | 84.0 | 82.35 |
| CDY17618 | Canola | cytosol | 84.0 | 82.35 |
| Bra026619.1-P | Field mustard | cytosol | 74.0 | 82.22 |
| CDY09393 | Canola | cytosol | 75.0 | 80.65 |
| AT2G02050.1 | Thale cress | cytosol | 80.0 | 77.67 |
| KRG90692 | Soybean | mitochondrion | 76.0 | 77.55 |
| Zm00001d027493_P001 | Maize | mitochondrion | 73.0 | 67.59 |
| EER92927 | Sorghum | cytosol | 73.0 | 67.59 |
| KRH16100 | Soybean | cytosol | 52.0 | 66.67 |
| HORVU4Hr1G082570.1 | Barley | mitochondrion | 70.0 | 63.06 |
| TraesCS5A01G496200.1 | Wheat | mitochondrion | 69.0 | 62.16 |
| TraesCS4B01G323800.1 | Wheat | cytosol | 69.0 | 62.16 |
| TraesCS4D01G320600.1 | Wheat | mitochondrion | 69.0 | 62.16 |
| Bra017426.1-P | Field mustard | cytosol | 82.0 | 59.85 |
| CDY15810 | Canola | cytosol, nucleus, plastid | 50.0 | 54.95 |
| Os03t0129900-01 | Rice | mitochondrion | 68.0 | 46.26 |
| GSMUA_Achr4P29690_001 | Banana | cytosol | 41.0 | 34.45 |
Protein Annotations
| EnsemblPlants:Solyc04g008490.1.1 | EnsemblPlantsGene:Solyc04g008490.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003954 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0055114 | InterPro:NADH_UbQ_OxRdtase_B18_su | PANTHER:PTHR20900 | PFAM:PF05676 | PFscan:PS51808 |
| UniParc:UPI0002767149 | UniProt:K4BP05 | MapMan:2.4.1.4.2.3 | : | : | : |
Description
No Description!
Coordinates
chr4:-:2117997..2118299
Molecular Weight (calculated)
11827.5 Da
IEP (calculated)
7.950
GRAVY (calculated)
-0.765
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MEVPGSSKKM IATQEEMVEN KVPLAYRDQC AHLLIPLNKC RQSEFYLPWK CEDERHTYEK CAYELVMERM LQMQKIREEE ARMKQKGHQS IPLIPKTANA
001: MEVPGSSKKM IATQEEMSAA KIALGSRDMC AHLLIPLNKC RQAEFYLPWK CEDERHVYEK CEYELVMERM LAMKKIREEE ALAKQNKLQG NAAVPLIPKT
101: ANA
101: ANA
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.