Factsheet for Zm00001d027493_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92927	Sorghum	cytosol	99.07	99.07
TraesCS4D01G320600.1	Wheat	mitochondrion	87.96	85.59
HORVU4Hr1G082570.1	Barley	mitochondrion	87.96	85.59
TraesCS5A01G496200.1	Wheat	mitochondrion	87.96	85.59
TraesCS4B01G323800.1	Wheat	cytosol	87.04	84.68
Solyc04g008490.1.1	Tomato	cytosol	67.59	73.0
KRG90692	Soybean	mitochondrion	65.74	72.45
VIT_01s0137g00010.t01	Wine grape	cytosol	64.81	70.0
Bra026619.1-P	Field mustard	cytosol	58.33	70.0
CDY09393	Canola	cytosol	58.33	67.74
CDY03083	Canola	cytosol	63.89	67.65
CDY17445	Canola	cytosol	63.89	67.65
CDY17618	Canola	cytosol	62.96	66.67
Bra024837.1-P	Field mustard	cytosol	62.96	66.67
Os03t0129900-01	Rice	mitochondrion	85.19	62.59
AT2G02050.1	Thale cress	cytosol	59.26	62.14
KRH16100	Soybean	cytosol	42.59	58.97
Bra017426.1-P	Field mustard	cytosol	62.96	49.63
CDY15810	Canola	cytosol, nucleus, plastid	40.74	48.35
GSMUA_Achr4P29690_001	Banana	cytosol	39.81	36.13

Protein Annotations

EntrezGene:100283425	MapMan:2.4.1.4.2.3	UniProt:B4FLH6	EMBL:BT037964	EMBL:BT085272	EMBL:EU952377
EMBL:EU964726	GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005747	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0031966	GO:GO:0045271	GO:GO:0055114	InterPro:NADH_UbQ_OxRdtase_B18_su
ProteinID:ONL93281.1	PFAM:PF05676	PFscan:PS51808	PANTHER:PTHR20900	UniParc:UPI00017B6AF2	EnsemblPlantsGene:Zm00001d027493
EnsemblPlants:Zm00001d027493_P001	EnsemblPlants:Zm00001d027493_T001	SEG:seg	:	:	:

Description

NADH-ubiquinone oxidoreductase B18 subunit4

Coordinates

chr1:-:6542791..6543117

Molecular Weight (calculated)

11961.7 Da

IEP (calculated)

7.935

GRAVY (calculated)

-0.206

Length

108 amino acids

Sequence
(BLAST)

001: MEAAAAAAGV ELGSSKPQIA TQAEMAEARV PLAYRDQCAH LLIPLNKCRV AEFYLPWKCE PERHAYEKCQ YELVMERMLQ MQKIREAQET KVKGGASIGL
101: IPATAKLA

Best Arabidopsis Sequence Match ( AT2G02050.1 )
(BLAST)

001: MEVPGSSKKM IATQEEMSAA KIALGSRDMC AHLLIPLNKC RQAEFYLPWK CEDERHVYEK CEYELVMERM LAMKKIREEE ALAKQNKLQG NAAVPLIPKT
101: ANA

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.