Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G320600.1 | Wheat | mitochondrion | 100.0 | 100.0 |
| TraesCS4B01G323800.1 | Wheat | cytosol | 99.1 | 99.1 |
| HORVU4Hr1G082570.1 | Barley | mitochondrion | 97.3 | 97.3 |
| Zm00001d027493_P001 | Maize | mitochondrion | 85.59 | 87.96 |
| EER92927 | Sorghum | cytosol | 84.68 | 87.04 |
| Bra026619.1-P | Field mustard | cytosol | 57.66 | 71.11 |
| Solyc04g008490.1.1 | Tomato | cytosol | 62.16 | 69.0 |
| CDY09393 | Canola | cytosol | 57.66 | 68.82 |
| KRG90692 | Soybean | mitochondrion | 60.36 | 68.37 |
| CDY03083 | Canola | cytosol | 62.16 | 67.65 |
| CDY17445 | Canola | cytosol | 62.16 | 67.65 |
| VIT_01s0137g00010.t01 | Wine grape | cytosol | 60.36 | 67.0 |
| CDY17618 | Canola | cytosol | 61.26 | 66.67 |
| Bra024837.1-P | Field mustard | cytosol | 61.26 | 66.67 |
| Os03t0129900-01 | Rice | mitochondrion | 86.49 | 65.31 |
| AT2G02050.1 | Thale cress | cytosol | 58.56 | 63.11 |
| KRH16100 | Soybean | cytosol | 41.44 | 58.97 |
| Bra017426.1-P | Field mustard | cytosol | 61.26 | 49.63 |
| CDY15810 | Canola | cytosol, nucleus, plastid | 36.94 | 45.05 |
| GSMUA_Achr4P29690_001 | Banana | cytosol | 36.94 | 34.45 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G496200.1 | EnsemblPlantsGene:TraesCS5A01G496200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003954 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0008137 |
| GO:GO:0016020 | GO:GO:0031966 | GO:GO:0045271 | InterPro:NADH_UbQ_OxRdtase_B18_su | PANTHER:PTHR20900 | PFAM:PF05676 |
| PFscan:PS51808 | SEG:seg | MapMan:2.4.1.4.2.3 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:663726423..663726758
Molecular Weight (calculated)
12242.0 Da
IEP (calculated)
8.635
GRAVY (calculated)
-0.190
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAAAAGV QLGTSKPQIA TQAEMAEARL PIPYRDQCAH LLIPLNKCRV AEFYLPWKCE PERHSYEKCQ YELVMERMLQ MQKIREAQAG AKVKGSVTIG
101: VPLAPSTAKL A
101: VPLAPSTAKL A
001: MEVPGSSKKM IATQEEMSAA KIALGSRDMC AHLLIPLNKC RQAEFYLPWK CEDERHVYEK CEYELVMERM LAMKKIREEE ALAKQNKLQG NAAVPLIPKT
101: ANA
101: ANA
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.