CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, vacuole
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002438	Potato	endoplasmic reticulum	52.79	78.34
Solyc03g061580.1.1	Tomato	plastid	25.75	68.18
KXG30817	Sorghum	plastid	26.18	64.21
PGSC0003DMT400074648	Potato	endoplasmic reticulum	41.2	57.14
KRH12694	Soybean	peroxisome, plasma membrane, plastid	89.27	56.83
KRH12696	Soybean	endoplasmic reticulum	89.7	54.57
HORVU0Hr1G034160.1	Barley	vacuole	86.7	50.63
HORVU3Hr1G004710.1	Barley	plasma membrane	86.27	50.38
TraesCS3A01G181300.1	Wheat	golgi	75.11	50.0
HORVU4Hr1G024000.1	Barley	plasma membrane	85.41	49.87
HORVU4Hr1G023920.1	Barley	plasma membrane	83.69	48.87
ATMG00513.1	Thale cress	extracellular, plasma membrane, vacuole	87.55	42.32
GRMZM5G834128_P01	Maize	plasma membrane	86.7	41.82
CDY45521	Canola	endoplasmic reticulum	86.7	38.7
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane, plastid	83.69	37.07
HORVU5Hr1G072300.1	Barley	vacuole	48.93	36.42
KRH28854	Soybean	plasma membrane	26.61	31.47
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	5.15	17.14
HORVU3Hr1G045020.1	Barley	endoplasmic reticulum	6.87	9.09

Protein Annotations

EnsemblPlants:KRG88442	EnsemblPlantsGene:GLYMA_U041500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:ND/Mrp_mem
PANTHER:PTHR42829	PANTHER:PTHR42829:SF2	PFAM:PF00361	PRINTS:PR01434	ProteinID:KRG88442	ProteinID:KRG88442.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0006EDB932	UniProt:A0A0R0EE13	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chrscaffold_660:-:3745..7289

Molecular Weight (calculated)

25785.0 Da

IEP (calculated)

9.087

GRAVY (calculated)

0.639

Length

233 amino acids

Sequence
(BLAST)

001: MVETFEKKSP LIITFKIDPI PKKGVIARCS PLFEYPPTAL IVITSAGATT SFLAATTGIL QNDLKRVIAY STCSQLGYMI FACGISNYSV SIFHLMNHAF
101: FKALLFLSAG SVIHAMSDEQ DMRKMGGLAS SFPFTYAMIL MGSLSLIGFP FLTGFYSKDV ILELAYTKYT ISRNFAFWLG SVSVLFTSYY SFRSLFLTFL
201: VPTNSFGRDI LRCHDVPIPM AIPLILLALG SLF

Best Arabidopsis Sequence Match ( ATMG00513.1 )
(BLAST)

001: MYLLIVFLPL LGSSVAGFFG RFLGSEGSAI MTTTCVSFSS ILSLIAFYEV APGASACYLR IAPWISSEMF DASWGFLFDS PTVVMLIVVT SISSLVHLYS
101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR
201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT
301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS
401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AK

Arabidopsis Description

NAD5ANADH dehydrogenase 5A [Source:TAIR;Acc:ATMG00513]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.