Factsheet for TraesCS3A01G181300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002438	Potato	endoplasmic reticulum	39.71	88.53
HORVU0Hr1G034160.1	Barley	vacuole	97.43	85.46
HORVU3Hr1G004710.1	Barley	plasma membrane	97.14	85.21
Solyc03g061580.1.1	Tomato	plastid	21.14	84.09
HORVU4Hr1G024000.1	Barley	plasma membrane	95.71	83.96
HORVU4Hr1G023920.1	Barley	plasma membrane	95.14	83.46
PGSC0003DMT400074648	Potato	endoplasmic reticulum	39.43	82.14
KRG88442	Soybean	cytosol, mitochondrion, vacuole	50.0	75.11
GRMZM5G834128_P01	Maize	plasma membrane	97.14	70.39
KXG30817	Sorghum	plastid	18.29	67.37
ATMG00513.1	Thale cress	extracellular, plasma membrane, vacuole	92.29	67.01
CDY45521	Canola	endoplasmic reticulum	91.43	61.3
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane, plastid	84.57	56.27
KRH12694	Soybean	peroxisome, plasma membrane, plastid	50.29	48.09
KRH12696	Soybean	endoplasmic reticulum	50.29	45.95
TraesCS4A01G141100.1	Wheat	plastid	23.14	41.54
TraesCS6A01G152800.1	Wheat	vacuole	4.29	14.15

Protein Annotations

EnsemblPlants:TraesCS3A01G181300.1	EnsemblPlantsGene:TraesCS3A01G181300	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042773	GO:GO:0055114
InterPro:NADHpl_OxRdtase_5	InterPro:ND/Mrp_mem	PANTHER:PTHR42829	PANTHER:PTHR42829:SF2	PFAM:PF00361	PRINTS:PR01434
TIGRFAMs:TIGR01974	TMHMM:TMhelix	MapMan:2.4.1.3.6	:	:	:

Description

No Description!

Coordinates

chr3A:+:209525298..209526350

Molecular Weight (calculated)

38613.7 Da

IEP (calculated)

7.413

GRAVY (calculated)

0.715

Length

350 amino acids

Sequence
(BLAST)

001: MSEDPHSPRF MCYLSIFTFF MLMLVTGDNF LQLFLGWEGA GLASYLLIHF GFTRLQADKA AIKAMLVNRV GDFGLALGIF GCFTLFQTVD FSTIFACASA
101: PRNEWIFCNM RLNAITLICI LLFIGVVGKS AQIGLHTWLP DAMEGPTPVS ALIHAATMVT AGVFMIARCS PLFEYSPTTL IVITFAGAMT SFLAATTGML
201: QNDLKRVIAY STCSQLGYMI FACGISNYSV NVFHLMNHAF FKALLFLSAG SVIHAMSDEQ DMRKMGGIAS SFPLTYAMML MGSLSLIGFP FLTGFYSKDV
301: ILELAYTKYT ISGNFAFWLG SVSVLFTSYY SFCLLFLTFL VPTNSFGRDR

Best Arabidopsis Sequence Match ( ATMG00513.1 )
(BLAST)

001: MYLLIVFLPL LGSSVAGFFG RFLGSEGSAI MTTTCVSFSS ILSLIAFYEV APGASACYLR IAPWISSEMF DASWGFLFDS PTVVMLIVVT SISSLVHLYS
101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR
201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT
301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS
401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AK

Arabidopsis Description

NAD5ANADH dehydrogenase 5A [Source:TAIR;Acc:ATMG00513]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.