Factsheet for TraesCS6A01G152800.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
plastid 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	29.25	32.29
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	14.15	12.61
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	23.58	11.85
CDX71645	Canola	plastid	54.72	9.31
ATCG01010.1	Thale cress	plasma membrane	64.15	9.12
VIT_00s0246g00140.t01	Wine grape	plasma membrane	28.3	6.19
TraesCS3A01G181300.1	Wheat	golgi	14.15	4.29
Solyc05g013110.1.1	Tomato	vacuole	1.89	2.33
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	11.32	2.07
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	0.0	0.0
TraesCS4A01G141100.1	Wheat	plastid	0.0	0.0
Solyc12g033070.1.1	Tomato	extracellular	0.0	0.0
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	0.0	0.0
CDY19664	Canola	endoplasmic reticulum, plasma membrane	0.0	0.0
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
PGSC0003DMT400028453	Potato	mitochondrion	0.0	0.0
KRH28854	Soybean	plasma membrane	0.0	0.0
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	0.0	0.0
HORVU6Hr1G037310.1	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G152800.1	EnsemblPlantsGene:TraesCS6A01G152800	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006139
GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042773	GO:GO:0055114
InterPro:NADHpl_OxRdtase_5_subgr	InterPro:Proton_antipo_N	PANTHER:PTHR42829	PANTHER:PTHR42829:SF3	PFAM:PF00662	PRINTS:PR01434
PRINTS:PR01435	SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:-:137632895..137633217

Molecular Weight (calculated)

12354.1 Da

IEP (calculated)

4.261

GRAVY (calculated)

0.771

Length

106 amino acids

Sequence
(BLAST)

001: MVFSVQLSIQ QINGSLIYQY QWSWTVNNYF SLEFGYLIDP LISIMLILIT IVGILVIYSD GYMSHIEGYL RFFVYTSFFN TSMLGLVTSS NLIHFFGNSW
101: ECVLIY

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.