CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028453	Potato	mitochondrion	23.14	69.77
Solyc02g011710.1.1	Tomato	endoplasmic reticulum, extracellular	26.74	64.2
CDX71645	Canola	plastid	99.74	62.28
Solyc05g013100.1.1	Tomato	golgi, mitochondrion, plastid	19.02	61.67
KRH03697	Soybean	endoplasmic reticulum, plasma membrane	10.54	58.57
KRH28854	Soybean	plasma membrane	28.28	55.84
ATCG01010.1	Thale cress	plasma membrane	92.8	48.39
VIT_00s0246g00140.t01	Wine grape	plasma membrane	57.84	46.39
PGSC0003DMT400074606	Potato	endoplasmic reticulum, extracellular	69.15	46.38
HORVU6Hr1G037310.1	Barley	cytosol	42.93	44.65
Solyc05g013110.1.1	Tomato	vacuole	9.51	43.02
Solyc12g033070.1.1	Tomato	extracellular	20.31	36.92
Solyc12g033000.1.1	Tomato	endoplasmic reticulum	13.37	36.62
Solyc11g021190.1.1	Tomato	endoplasmic reticulum, plasma membrane	16.45	30.33
CDY45521	Canola	endoplasmic reticulum	24.42	18.2
VIT_00s0246g00150.t01	Wine grape	endoplasmic reticulum, extracellular	0.26	1.04
TraesCS6A01G152800.1	Wheat	vacuole	0.0	0.0
Solyc02g011720.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

KEGG:00624+1.6.5.-	MapMan:35.1	GO:A0A078G2L0	UniProt:A0A078G2L0	EnsemblPlants:CDY19664	ProteinID:CDY19664
ProteinID:CDY19664.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006139	GO:GO:0008137	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0042773	GO:GO:0048038	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00009372001	InterPro:NADH_UbQ_OxRdtase_chlpt_su5_C	InterPro:NADHpl_OxRdtase_5_subgr	InterPro:ND/Mrp_mem	PFAM:PF00361	PFAM:PF01010
PRINTS:PR01434	PRINTS:PR01435	PANTHER:PTHR42829	PANTHER:PTHR42829:SF3	TMHMM:TMhelix	UniParc:UPI0004EF4077
SEG:seg	:	:	:	:	:

Description

BnaC09g29200DBnaC09g29200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2L0]

Coordinates

chrLK032099:+:300930..302239

Molecular Weight (calculated)

43804.0 Da

IEP (calculated)

9.407

GRAVY (calculated)

0.409

Length

389 amino acids

Sequence
(BLAST)

001: MEGPTPISAL IHAATMVAAG IFLVARLLPL FIVIPSIMYI ISFIGIITVL LGATLALAQK DIKRGLAYST MSQLGYMMLA LGSGSIIHSM EAIVGYSPDK
101: SQNMILMGGL TKHVPITKTA FLVGTLSLCG IPPLACFWSK DEILNDSLLF SPIFAIIACS TAGLTAFYMF RIYLLTFEGH LNTYFINYSG KKSSSFYSIS
201: LWGKEEDKKL NRNFGLVPLL TMNNTKRASF FGNKTYKISN NVRNQTFITV ENFGLNTRTF YYPHESDNTI LFPMLVLLLF TLFIGAIGIP FNQEGIDFDI
301: LSKLLTPSIN LLHTNSENFV DWYEFLKNAI FSVSIALFGI FIAYCLYKPF YSSRLNLTLL NSFQKWSSKR IRWEKPINFV YNCKTNEFF

Best Arabidopsis Sequence Match ( ATCG01010.1 )
(BLAST)

001: MEHTYQYSWI IPFIPLPVPI LLGVGLLLFP TATKNLRRMW TFLSIFLLSI VMIFSIYLSI QQIFLSCIHQ NVWSWTINNE FSFEFGYFID PLTSIMSILI
101: TTVGILVLIY SDNYMSHDQG YLRFFAYMGF FNTSMLGLVT SSNLIQVYFF WELVGMCSYL LIGFWFTRPI AANACQKAFV TNRVGDFGLL LGILGLYWIT
201: GSFEFQDLFE IFNNLILNNR VNLLFLTLCA FLLFVGPIAK SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFIVIPSI MYIISLIGII
301: TVLLGATLAL AQKDIKRGLA YSTMSQLGYM MLALGMGSYR SALFHLITHA YSKALLFLGS GSIIHSMEAI VGYSPDKSQN MILMGGLTKH VPITKTAFLI
401: GTLSLCGIPP LACFWSKDEI LNDSLLFSPI FAIIACSTAG LTAFYMFRIY LLTFEGHLNT YFLNYSGKKS GSFYSLSLWG KEEEKKLNKN FGLVPLLTMN
501: NTKRASFFCN KTYKISNNVR NQIFITVENF GLNTRTFYYP HESDNTILFP MLILVLFTLF IGAIGIPFNQ EGIDFDILSK FFTPSINLLH KNSQNFVDWY
601: EFLRNATFSV SIAFFGIFIA YCLYKPFYSS LLNLTLLNSF QKWNSKRIHW EKLINFVYNW SYNRGYIDSF FKTSLIESIR RLAKQTTFFD KRIIDGITNG
701: VGITSFFVGE VTKYIGGSRI SSYLFLYLSY VLIFLMILFF FYFEKF

Arabidopsis Description

NDHFNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56752]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.